New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 707934NA (NA)5 (0.120) 3/250 NT NA noncoding (2/34 nt) other REP63c
?NC_000913 = 832356 NA (NA)noncoding (32/34 nt) other REP75b

ATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATAACAAAACATAATTAAATAAAATGTAACCGCTTTCAT  >  NC_000913/707797‑708076
                                                                                                                                         |                                                                                                                                              
aTCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCacgca                                                                                                                                           >  2:430724/1‑139 (MQ=255)
aTCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTCCCTGATGCGCTACGCTTATCAGGCCTACATGCTCTCTGAGAAAAATTGAGTTTGCGTGGTTTTGTAGGCCAGATAAGGCGTTCACGCCGCATCCGGCAAGaa                                                                                                                                           >  1:336694/1‑143 (MQ=21)
   cGGCAAGGAACAGACAAACAGGTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATAGATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACa                                                                                                                                        <  1:257446/143‑1 (MQ=255)
    ggCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCGGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAg                                                                                                                                       <  1:265563/143‑1 (MQ=255)
           gaCAGACAAACAGTTGCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATACTGAGTTTGAGTGCTTTTGCAGGCCGCATAAGGCGTTCACGCCGCCTCCGGCAAGAAACAGCAAACaa                                                                                                                                <  1:636671/142‑1 (MQ=21)
           aaCAGACGAACAGTATCAAACGCTAAAGTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTGGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACaa                                                                                                                                <  1:645047/143‑1 (MQ=255)
              aGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACGAAACAGCAAACAATcc                                                                                                                             >  2:649062/1‑143 (MQ=255)
                 cAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATCTATTGAGATAGCGATCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCGAGAAACAGCAAACACTCCcaa                                                                                                                          >  2:272270/1‑143 (MQ=18)
                  aaaCAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACCGCAAACAATCCaaaa                                                                                                                         >  2:664172/1‑143 (MQ=255)
                                  gagatggCCTGATGCGCTACGCTTCTCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAgcggc                                                                                                         <  2:892592/137‑1 (MQ=255)
                                   aaaTTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCGTTTGTAGGCCGGATAAGCCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGGCGCGTTCAgcggcg                                                                                                        >  2:447251/1‑143 (MQ=255)
                                     aTTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAAAAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGtt                                                                                                      >  2:319244/1‑143 (MQ=255)
                                      ttGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGgtt                                                                                                     >  1:13949/1‑143 (MQ=255)
                                         cctggagcggTACGCGTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGtttttt                                                                                                  <  2:138190/137‑1 (MQ=255)
                                          cTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTc                                                                                                 <  1:273201/143‑1 (MQ=255)
                                            gATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTg                                                                                               >  1:689838/1‑143 (MQ=255)
                                            gATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTg                                                                                               >  2:332407/1‑143 (MQ=255)
                                             aTGCGCTACGCTTACCAGGCCGACATGATCTCTGCAATATACTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCCCATCTGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGc                                                                                              <  2:576691/143‑1 (MQ=25)
                                             aTGCGCTACGCGTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGc                                                                                              <  1:824222/143‑1 (MQ=255)
                                              tGCGCTACGCTTTTCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCt                                                                                             <  2:126223/143‑1 (MQ=255)
                                               gcggTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGGAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCtt                                                                                            <  2:613650/143‑1 (MQ=255)
                                               gcgcTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCtt                                                                                            <  2:299456/143‑1 (MQ=255)
                                                 gcTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTCTTTTCTGCtttt                                                                                          >  1:18035/1‑143 (MQ=255)
                                                 gcTACGCTTATCAGGACTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAAAAACAGCAAACAATCCAAAAAGACGCATTCAACAGCGTTATTTCTACtttt                                                                                          >  2:484970/1‑143 (MQ=21)
                                                     cGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTTTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCACGTTCAACGGCGTTGTCTCTGCTTtttttc                                                                                      >  2:172206/1‑143 (MQ=25)
                                                      gCTTATCGGGCCTACATGGTCTCGGCAATATATTGAGTTTGCGTGCTTTTGGAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTcg                                                                                     <  2:198181/143‑1 (MQ=255)
                                                      gCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCTAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTcg                                                                                     <  2:451670/143‑1 (MQ=255)
                                                         tATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGa                                                                                  >  2:589565/1‑143 (MQ=255)
                                                         tATCAGGCCTACATGATCTCTGCAATATATCGAGTTTGCGTGCTGGTGGAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGa                                                                                  <  1:33235/143‑1 (MQ=255)
                                                           tCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGATCAGCGGCGTTTTTTCTGCCTTTCTTCGCGaat                                                                                >  2:29003/1‑143 (MQ=255)
                                                              ggCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGaattaa                                                                             >  2:766677/1‑143 (MQ=255)
                                                                  tACATGATCTCTGCAATATATTGAATTTGCGTGATTATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCctacataatcacgcaaattcaatatattgcagcgatcatgtaggccggataaacgtagtgcatcaggcaca                                                                         >  1:796536‑M1/1‑72 (MQ=255)
                                                                  tACATGATCTCTGCAATATATTGAATTTGCGTGATTATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCctacataatcacgcaaattcaatatattgcagagatcatgtaggccggataaacgtagtgcatcaggccaa                                                                         >  1:488727‑M1/1‑72 (MQ=255)
                                                                       gATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTc                                                                    >  1:16026/1‑143 (MQ=255)
                                                                        aTCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCg                                                                   <  2:320458/143‑1 (MQ=255)
                                                                         tcttTGCAATATATTGTGTTTGCGTGCTTTTCTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGc                                                                  <  2:486846/143‑1 (MQ=255)
                                                                            ctGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAAt                                                               <  1:821304/143‑1 (MQ=255)
                                                                             tGCAATATCTGGAGCTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAAtt                                                              <  1:269505/143‑1 (MQ=255)
                                                                             tGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCCAtt                                                              >  2:460260/1‑143 (MQ=255)
                                                                                  tatatTGAGCTGGCGTGCTTTTGGAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATcc                                                         <  2:878342/143‑1 (MQ=255)
                                                                                     atTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGACTTACTTCCGCTTCGCAATTTATCCatc                                                      >  1:259115/1‑142 (MQ=255)
                                                                                       ggagtgcgCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCataaa                                                    <  1:534330/136‑1 (MQ=255)
                                                                                         aGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGATTTTTCTTCTTTTCTTCGCGAATTAATCCCGCCTCGCAATTTATCCataaaat                                                  >  2:821036/1‑143 (MQ=255)
                                                                                            ttGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCataaaataaa                                               <  1:493827/143‑1 (MQ=255)
                                                                                                gTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGACTTATTTCCGCTTCGCACTTTCTCCATAAAATAAATTTa                                           >  1:139904/1‑143 (MQ=255)
                                                                                                gTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTa                                           >  2:632252/1‑143 (MQ=255)
                                                                                                gTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGGTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCCATTTCTCCATAACATAAATTTa                                           >  1:764574/1‑143 (MQ=255)
                                                                                                 tGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTTTGCTTTTCTTTGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTaa                                          <  1:716126/143‑1 (MQ=255)
                                                                                                 tGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAAtttca                                          >  1:357334/1‑141 (MQ=255)
                                                                                                 tGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAAAAGCCCAAAATCAAGAACGCCGCGCTCATCTGCGGGTTTTCTGCTTTTCTTCGCGAATTAACTCCGCTTCGCCATTTATCCATAAAATAAATTTaa                                          >  1:911294/1‑143 (MQ=25)
                                                                                                  gcgtttGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTaaa                                         <  1:797741/140‑1 (MQ=255)
                                                                                                   cTTTTGTTGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTaaaa                                        <  1:332407/143‑1 (MQ=255)
                                                                                                    ttttGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCctacaaaagcatgcaaattcaatatattgcagagttcacgtaggcctgataagcgtagcgcatcaggaagttttgcgtttgttcatcagcctggtgtcgggcata                                       >  1:598963‑M1/1‑38 (MQ=255)
                                                                                                    ttttGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACCATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTACTCAAGAAATAAATCCTCTTCAAAATATATCCATAAAATAAATTTAAAAt                                       >  1:759394/1‑143 (MQ=37)
                                                                                                     tttGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAGAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATa                                      <  2:689838/143‑1 (MQ=255)
                                                                                                         gaGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATAACaa                                  <  1:549562/142‑1 (MQ=255)
                                                                                                           ggCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATAACaaaa                                >  1:144157/1‑143 (MQ=255)
                                                                                                             ccGGATAAGGCGTTTACGCCGCATCCGGCctacaaaagcatgcaaattcaatatattgcagagttcacgtaggcctgataagcgtagcgcatcaggcagttttgcgtttgttcatcagcctgatgccgggcatagcccggcat                              >  1:654377‑M1/1‑29 (MQ=255)
                                                                                                              cGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATaacataacat                             >  1:805561/1‑143 (MQ=255)
                                                                                                               ggATAAGGCGTTCACGCCGCATCCGGCCCGAAACAGCAAACCATCCAACACGCTGAGTTCAGAAGAGATTTTTCTACTTTTCTTCGCGGCTTACGTTCACTTCGCAATTTATCCATAAAATAAATTTAAAATAACAAAACATa                            >  1:205213/1‑143 (MQ=255)
                                                                                                                gATAAGGCGTTTACGCCTTATCCGGCctacaaaagcatgcaaattcaatatattgcagagttcacgtaggcctgataagcgtagcgcatcaggcagttttgcgtttgttcatcagcctgatgccgggcatagcccggcataaa                           >  1:12099‑M1/1‑26 (MQ=255)
                                                                                                                gATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATAACAAAACATaa                           >  2:632427/1‑143 (MQ=255)
                                                                                                                 aTAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTCTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATAACAAAACATAAt                          <  2:18035/143‑1 (MQ=255)
                                                                                                                      gCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCTAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGACTCGCAATATATCCATAAAATAAATTTAAAATAACAAAACATAATtaaat                     >  2:232234/1‑143 (MQ=255)
                                                                                                                      gCGTTCACGCCGCATACGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATAACAAAACATAATtaaat                     >  2:68360/1‑143 (MQ=255)
                                                                                                                        gTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAGATTTAAAATAACAAAACAAAATtaaataa                   >  1:450025/1‑143 (MQ=255)
                                                                                                                               ccgcATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCTATAAAATAAATTTAAAATAACAAAACATAATTAAATAAAATGTaa            >  2:242590/1‑143 (MQ=255)
                                                                                                                               ccgcATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATAACAAAACATAATTAAATAAAATGTaa            <  1:171223/143‑1 (MQ=255)
                                                                                                                                cgcATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGCATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATAACAAAACATAATTAAATAAAATGTAAc           >  2:318813/1‑143 (MQ=255)
                                                                                                                                cgcATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATAACAACACATAATTAAATACAATGTAAc           >  1:42536/1‑143 (MQ=255)
                                                                                                                                  cATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATGTAAAATAACAAAACATAATTAAATAAAATGTAACCg         <  1:589565/143‑1 (MQ=255)
                                                                                                                                   aTCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATAACAAAACATAATTACATCAAATATAACCGc        >  1:328946/1‑143 (MQ=255)
                                                                                                                                      cGGCctacaaaagcatgcaaatacaatatattgcagagttcacgtaggcctgataagcgtagcgcatcaggcagttttgcgtttgttcatcagcctgatgccgggcatagcccggcataaaagattactgcgcagcggcaggt     >  2:134216‑M1/1‑4 (MQ=255)
                                                                                                                                        gCctacaaaagcatgcaaattcaatatattgcagagttcacgtaggcctgataagcgtagcgcatcaggcagttttgcgtttgttcatcagcctgatgccgggcatagcccggcataaaagattactgcgcagcggcgggttt   >  1:138119‑M1/1‑2 (MQ=255)
                                                                                                                                         cctacaaaagcatgcaaattcaatatattgcagagttcacgtaggcctgataagcgtagcgcatcaggcagttttgcgtttgttcatcagcctgatgccgggcatagcccggcataaaagattactgcgcagcggcaggttta  <  1:524750‑M1/143‑143 (MQ=255)
                                                                                                                                         |                                                                                                                                              
ATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATAACAAAACATAATTAAATAAAATGTAACCGCTTTCAT  >  NC_000913/707797‑708076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.