New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 707934	NA (NA)	5 (0.120)	3/250	NT	NA	noncoding (2/34 nt)	other	REP63c
	?	NC_000913	= 832356	NA (NA)					noncoding (32/34 nt)	other	REP75b

TAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGC‑TATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCAATTGTTCGCGCAAC  >  NC_000913/832215‑832498                                                                                                                                               |                                                                                                                                               tAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGC‑TATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGg                                                                                                                                               <  1:524750‑M2/143‑2 (MQ=255)  aaaCCCGCCGCTGCGCAGTAATCTTTTATGCCGGGC‑TATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGgc                                                                                                                                              >  1:138119‑M2/1‑141 (MQ=255)    aCCTGCCGCTGCGCAGTAATCTTTTATGCCGGGC‑TATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGTATTTGCATGCTTTTGTAGgccg                                                                                                                                            >  2:134216‑M2/1‑139 (MQ=255)          tgCTGCGTAGTAATCTTTTATGCCGGGC‑TATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAg                                                                                                                                      <  2:259419/142‑1 (MQ=255)               cgcAGTAATCTTTTATGCCGGGC‑TATGCCCGGCATCAGGCTGATGCAGAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGGCTACGTGACCCCTGCACTATATTGAATTTGCCTGCTCTGGTAGCCCGGCGCAGGCGtc                                                                                                                                 >  2:649650/1‑142 (MQ=21)               cgcAGTAATCTTTTATGCCGGGC‑TATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGtt                                                                                                                                 <  2:67742/143‑1 (MQ=255)                   gTAATCTTTTATGCCGGGC‑TACGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCGTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAcg                                                                                                                             <  2:86821/143‑1 (MQ=255)                    tAATCTTTTATGCCGGGC‑TATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAcgc                                                                                                                            >  2:54321/1‑143 (MQ=255)                    tAATCTTTTATGACGGGC‑TATGACCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCGGGATAAGGCGTTTAcgc                                                                                                                            <  1:783492/143‑1 (MQ=255)                    tAATCTGTTCTGGCTGGG‑TATGCCTGTCATCAGGCTGATGACCAATTGCAAATCTGCCTGTTGCGCTACGCTTTTCTGGCCTACGTGACCTCTGCAATATATTTAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAcgc                                                                                                                            <  2:83231/143‑1 (MQ=18)                    tAATCCTTTATGCCGGTC‑TATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGCTGAGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAcgc                                                                                                                            <  2:684452/143‑1 (MQ=255)                     aaTCTTTTATGCCGGGC‑TATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTAcgcc                                                                                                                           <  1:818528/143‑1 (MQ=255)                      aTCTTTTATGCCGGGC‑TATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGCTGCCCTACGCTTATTAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGCTTAcgccg                                                                                                                          >  2:657338/1‑143 (MQ=255)                          tttATGCCGGGC‑TATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGgccggataaggcgtaaacgccttatc                                                                                                                      >  1:12099‑M2/1‑117 (MQ=255)                             aTGCCGGGC‑TATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGgccggatgcggcgtaaacgccttatccgg                                                                                                                   >  1:654377‑M2/1‑114 (MQ=255)                              tGCCGGGCATAT‑CCCGGCATCAGGCTGATGAACAAACGCAACACTGCCTGCTGCGCTATGCTTATCAGGCCTACGTCAACTCTGCAATCGATTGCCTTTTCATGCATTTGTAGGCCGGACACGGCGTTCACGCCGCAcccagg                                                                                                                  >  2:829647/1‑140 (MQ=16)                              tGCCGGGC‑TATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTGACGCCGCATCCGGc                                                                                                                  >  1:332577/1‑143 (MQ=255)                              tGCCGGGC‑TATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATAAGGCATACGGGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                                                                                  >  1:339507/1‑143 (MQ=255)                                 cGGGC‑TATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGCATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTCCGCCGCATcctccact                                                                                                               >  1:806248/1‑137 (MQ=255)                                       tATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTcaca                                                                                                          <  1:736934/143‑1 (MQ=255)                                       tATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTcaca                                                                                                          <  2:459866/143‑1 (MQ=255)                                       tATGCCCGACACCAGGCTGATGAACAAACGCAAAACTTCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGgccggatgcggcgtaaacgccttatccggcctacaaaa                                                                                                          >  1:598963‑M2/1‑105 (MQ=255)                                          gCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCacaaca                                                                                                       >  1:824170/1‑143 (MQ=255)                                           cccGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCAcaacaa                                                                                                      <  2:518337/143‑1 (MQ=255)                                             cGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGc                                                                                                    >  1:614553/1‑143 (MQ=255)                                                   cAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGAATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGt                                                                                              <  1:4114/143‑1 (MQ=255)                                                    aGGCTGATGAACAAACGCAAAACTGCCTGATGAGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTTAATTTGCATGCTTATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCCCAACAAGCACTTGTc                                                                                             >  2:854891/1‑143 (MQ=255)                                                     ggCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCa                                                                                            <  2:524750/143‑1 (MQ=255)                                                            gaACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCACttt                                                                                     >  2:583804/1‑143 (MQ=255)                                                            gaACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGCCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCAGCATCCGGCATTTCAGCACAAGCACGTGTCAGCAAttt                                                                                     >  2:421270/1‑143 (MQ=18)                                                            gaACAAACCCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAAttt                                                                                     <  2:40086/143‑1 (MQ=255)                                                             aaCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCCCTTGTCAGCCATTTg                                                                                    >  1:58082/1‑143 (MQ=255)                                                              aCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTga                                                                                   <  2:585448/143‑1 (MQ=255)                                                              aCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACGCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTga                                                                                   <  2:491413/143‑1 (MQ=255)                                                               cAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTgag                                                                                  <  1:692704/143‑1 (MQ=255)                                                                         ttggcctGATGCACTACGTTTATCCGGCCTACATGATCTCTGCAATATATTGAATTTGCGTGATTATGTAGgccggatgcggcgtgaacgccttatccggcctacataatcacgcaaattcaatatattgcagagatcatgta                                                                        >  1:488727‑M2/4‑71 (MQ=255)                                                                         tgtgcCTGATGCACTACGTTTATCCGGCCTACATGATCGCTGCAATATATTGAATTTGCGTGATTATGTAGgccggatgcggcgtgaacgccttatccggcctacataatcacgcaaattcaatatattgcagagatcatgta                                                                        >  1:796536‑M2/3‑71 (MQ=255)                                                                           tGCCTGAGGCGCTACGCGTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGaaaa                                                                      <  1:744202/143‑1 (MQ=255)                                                                               tGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAAtt                                                                  >  2:749348/1‑143 (MQ=255)                                                                               ggATGCGCTACGCTTATCAGGCCTACGGGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAAtt                                                                  <  1:833801/142‑1 (MQ=255)                                                                                      cTACGCTTATCAGGCCTACGCGAACTCTGCAATATATTGCATTTGCATGCTTTTGTAGGCCGGAGAACACGTTCACGCCGCATACGGCATTTCACAACAAGCCCTTGTCAGCAATCTGCGAACACGGGAAACAATTTACCTgc                                                           >  2:441540/1‑142 (MQ=18)                                                                                          gCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGTGAACACGGGAGAAAGTTTTTCTGTTTTa                                                       >  1:374734/1‑143 (MQ=255)                                                                                                     cTACGTGATCTCTGCAATGTTTCGTATTTGCATGCTTTTGTACGCCGGATAACGCGTTTACGCCTCATCCGGCATTTCACAACAAGCACATGTCAGCAATTTGAGAACACTGGAAAAAATTTATCTGTTTTACCGCCCATAAg                                            <  2:128637/143‑1 (MQ=255)                                                                                                     cTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTCCGCAGGTCTTTTTATTGCACGACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAg                                            <  1:668726/143‑1 (MQ=25)                                                                                                        cGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGGTAAGGCGTTTACGCCGCATCCGGCAGTTCGCAACAAGCACTCGTCAGCACTTTGAGCACCCGGGGAAACATTTCTATGGTTTGCCGTCCCTAAGCCa                                         >  1:332958/1‑143 (MQ=21)                                                                                                                        tatTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTtct                         <  1:583804/143‑1 (MQ=255)                                                                                                                          ttGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTctct                       >  1:508616/1‑143 (MQ=255)                                                                                                                             aaTTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCtata                    <  2:58082/143‑1 (MQ=255)                                                                                                                                  gCAGGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCaa               <  1:657338/143‑1 (MQ=255)                                                                                                                                           tGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGGCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCAATTGTTcgcg      <  2:21268/143‑1 (MQ=255)                                                                                                                                            gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCAATTGTTCgcgc     <  1:527648/143‑1 (MQ=255)                                                                                                                                            gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTACACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCAGCTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTAGACACAATTGttggagc     >  2:51883/1‑138 (MQ=38)                                                                                                                                               ggCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCCATTTGCGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTCCTCTATAGCCCATTGTTCGCGCacc  >  2:270510/1‑141 (MQ=255)                                                                                                                                               |                                                                                                                                               TAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGC‑TATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCAATTGTTCGCGCAAC  >  NC_000913/832215‑832498

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.