New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1068451	NA (NA)	4 (0.090)	4/250	NT	NA	noncoding (2/34 nt)	other	REP92b
	?	NC_000913	2001998 =	NA (NA)					noncoding (30/34 nt)	other	REP141a

ACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCATTGAGTAAAATCGCGCCAA  >  NC_000913/1068309‑1068593                                                                                                                                               |                                                                                                                                               aCCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC                                                                                                                                                <  2:485398‑M1/143‑1 (MQ=255)      cgGTTACCCGGTGGTTGATACTGATGACAAATGTACGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCCGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGaa                                                                                                                                           <  2:519531/143‑1 (MQ=255)        gTTACCCGGTGGTTGATACTGATGACAAAGGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCACTATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACa                                                                                                                                         >  1:881333/1‑143 (MQ=255)         ttACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACaa                                                                                                                                        <  1:108592/143‑1 (MQ=255)         ttACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACaa                                                                                                                                        <  1:554245/143‑1 (MQ=255)          tACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAAt                                                                                                                                       <  1:270676/143‑1 (MQ=255)           aCCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATg                                                                                                                                      <  1:843774/143‑1 (MQ=255)                gtggtTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCACATCCGGCATGAACCACGCGTAc                                                                                                                                 >  2:747692/1‑143 (MQ=255)                gtctttGGTACTGATGACAAAGGTTATGTTGCCTGCTGCGCGGTGCTTATCAGGGCTACCTGAAGATTTCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTAc                                                                                                                                 <  2:378282/139‑1 (MQ=18)                  ggtTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGt                                                                                                                               <  1:583027/143‑1 (MQ=255)                   gtTGATACGGATGACAAAGGTAAGCTTGCCTGATGCGGGATGCTTATTAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGtt                                                                                                                              <  2:630274/143‑1 (MQ=255)                    ttGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTCTACGCCGCATCCGGCATGAACAATGCGGACGTTg                                                                                                                             >  2:270757/1‑143 (MQ=255)                     tGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGt                                                                                                                            <  1:490831/143‑1 (MQ=255)                      agtACTGATTAAAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTc                                                                                                                           <  2:17773/141‑1 (MQ=255)                             atgaCAAATGTAAGCTTGCCTGTTTCTTGATGCTTAGCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATc                                                                                                                    <  2:354670/143‑1 (MQ=25)                              tgaCAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGACCAATGCGTCCGTTGTCAACAATCt                                                                                                                   >  2:850273/1‑143 (MQ=255)                               gaCAAATGGCAGCTTGCCTGATGCGCGATGCTTCTCAGGCCTACCAGAAGATTGTAATATATTGAATGTGCACTGTTCTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTg                                                                                                                  <  2:569633/143‑1 (MQ=21)                                aCAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGc                                                                                                                 >  1:884279/1‑143 (MQ=255)                                  aaaTGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCACCAATCTGCAc                                                                                                               >  2:854477/1‑143 (MQ=255)                                          gCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATGAACAATGCATACGATGTCACGAATCTGCAccgcccata                                                                                                       >  2:273953/1‑139 (MQ=21)                                            ttGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAAc                                                                                                     <  2:179110/143‑1 (MQ=255)                                              gCCTGCTGCTCGATTCTTATCAGCCCTACCAGAATATTGCAATATCTTCAATTTGCACTGTTTTGTATGCCCGATAAGGCGTTTACGCCGCATCCGGCATTAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAAccc                                                                                                   <  2:303819/143‑1 (MQ=21)                                                    tGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCcggcgg                                                                                             >  2:490560/1‑143 (MQ=255)                                                        cgATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGtttt                                                                                         >  1:649538/1‑143 (MQ=255)                                                         gATCCTTATCAGGCATACACGATGATTGCAAGATGTTGACGTTGCACTGTTTTGTGGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGCACGTTGTTAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTc                                                                                        <  2:505805/143‑1 (MQ=18)                                                           tGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTg                                                                                      <  2:253850/143‑1 (MQ=255)                                                              ttAGCAGGCCGACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACACCTCATCAGGCAAATGCAATTCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGttt                                                                                   <  2:191860/143‑1 (MQ=25)                                                                 tCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGCACATTGCGTACGTTGTCAACCATCTGCACCGCCGGTAAACCCAGCAGTTTTATGTTTAta                                                                                >  1:20270/1‑142 (MQ=25)                                                                 tCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATg                                                                                >  1:749258/1‑143 (MQ=255)                                                                        tACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCtg                                                                         >  2:211436/1‑143 (MQ=255)                                                                        tACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCtg                                                                         >  2:586740/1‑143 (MQ=255)                                                                           cAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTGGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCtgatg                                                                      <  1:661244/143‑1 (MQ=255)                                                                             gaagaTTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGaa                                                                    <  1:351829/143‑1 (MQ=255)                                                                                gagtGCAATATATTGAATTTGCACTGTTGTGTAGGGCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGaacaa                                                                 <  2:381263/140‑1 (MQ=255)                                                                                  ttGCAATTTATTGAATTTGCACATTTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGGCctacaaaaatgtgcacattcaataaattgcaattcaacttgtaggcctgctacgcgcagcgcatcaggcaatttggcgttg                                                               >  1:384722‑M1/1‑62 (MQ=255)                                                                                     cAATTTATTGAATTTGCACATTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCctacataaatgtgcaaatccaataaattgcaattcaactggtcggcctgataagcgcagcgcatcaggcagcttggcgacgccg                                                            >  2:510076‑M1/1‑59 (MQ=255)                                                                                       atatatTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTgg                                                          <  1:197997/143‑1 (MQ=255)                                                                                           atTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGt                                                      <  1:334237/143‑1 (MQ=255)                                                                                            ttGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAACCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTCTATGGCTCCTGACGAGCAACTCCCGGCCGTg                                                     >  2:199964/1‑143 (MQ=37)                                                                                                     cACTGTTGTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTcaa                                            <  2:509324/143‑1 (MQ=255)                                                                                                      ccTGGTTTGTTGGCCGGATTCGGCGTTTCCGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTcaac                                           <  2:816111/142‑1 (MQ=38)                                                                                                          ttttGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTGTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGACCGTcaaccaac                                       >  1:200014/1‑143 (MQ=255)                                                                                                                aGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTg                                 <  1:392822/143‑1 (MQ=255)                                                                                                                  gCCGGATAAGGCGTTTACGCCGCATCCGGCctacaaaaatgtgcaaattcaataaattgcaattcaacttgtaggcctgataagcgcagcgcatcaggcaatttggcgttgccgtcagtctcagttactccggttaccacgat                               >  2:130721‑M1/1‑30 (MQ=255)                                                                                                                  gCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTCACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGCCGGTGGAACGTCAACCAACTTTCTgtt                               >  1:7746/1‑141 (MQ=255)                                                                                                                      gATAAGGCGTTTACGCCGCATCCGGCctacaaaaatgtgcaaattccataaattgcaattcaacttgtagccctgataagcgccgcgcatccggcaacttggccttgccgtcagtctcagataataagaaaacaacgattaac                           >  1:847589‑M1/1‑26 (MQ=255)                                                                                                                      gATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTacc                           >  1:104709/1‑141 (MQ=255)                                                                                                                      gATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAAAAATCTGCAGCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCGCCTGCTGAACAACTTTTGGCGGTGGAACGTCAACCAACTTTCTGCTTaaa                           >  1:575661/1‑142 (MQ=38)                                                                                                                       aTAAGACGTTTATGCCTCATCCGGCCTGTCCAAGGCGTACGTTGTCAACAATCTGCATCGCCTGGAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTaaca                          <  2:881333/143‑1 (MQ=255)                                                                                                                         aaGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTaacaac                        <  2:496394/143‑1 (MQ=255)                                                                                                                                   cgccgcATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCATTGAGTa              <  2:29021/143‑1 (MQ=255)                                                                                                                                        tatgcgggctacaagaatgtgcaaattcaattatttgcaattcaacttgtaggccttataagcgcagcgcatcaggcaatttggcgttgccgtcagtctcagttaatcaggttacaacgattatccctgcagcagagacagaa         <  2:296347‑M1/139‑136 (MQ=255)                                                                                                                                          tCCGGCctacaaaaatgtgcaaattcaataaattgcaattcaacttgtaggcctgataagcgcagcgcatcaggcaatttggcgttgccgtcagtctcagttaatcaggttacaacgattaaccctgcagcagagacagaacc       >  1:825727‑M1/1‑6 (MQ=255)                                                                                                                                           ccGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCATTGAGTAAAATcgcg      <  2:201496/143‑1 (MQ=255)                                                                                                                                             ggCctacaaaaatgtgcaaattcaataaattgcaattcaacttgtaggcctgataagcgcagcgcatcaggcaatttggcgttgccgtcagtctcagttaatcaggttacaacgattcaccctgccgccgagccggcacctgc    >  1:372395‑M1/1‑3 (MQ=255)                                                                                                                                               cctacaaaaatgtgcaaattcaatagattgcaattcatcttgtaggcctgatgagcgcagcgcatcaggcaatttggcgttgccgtcagtctcagttaatcaggttacaacgattaaccctgcagcagagacagaacctgctg  <  2:725222‑M1/143‑143 (MQ=255)                                                                                                                                               |                                                                                                                                               ACCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTGCCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCATTGAGTAAAATCGCGCCAA  >  NC_000913/1068309‑1068593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.