New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2464211 =	44 (0.960)	6 (0.150)	6/238	NT	14.0%	intergenic (+141/+41)	yfdF/mlaA	protein YfdF/intermembrane phospholipid transport system ‑ outer membrane lipoprotein MlaA
	?	NC_000913	2464243 =	34 (0.820)					intergenic (+173/+9)	yfdF/mlaA	protein YfdF/intermembrane phospholipid transport system ‑ outer membrane lipoprotein MlaA

AAAATTATTTTTCCAGTTTTTTGATTTTTCAACAGCTGAATATCGGAAATAGTCAGTGACGAACATCAGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCATGAC  >  NC_000913/2464069‑2464349                                                                                                                                               |                                                                                                                                           aaaaTTATTTTTCCAGTTTTTTGATTTTTCAACAGCTGAATATCGGAAATAGTCAGTGACGAACATCAGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAacaaca                                                                                                                                            <  2:773808/143‑1 (MQ=255)  aagttattTTGCCAGTTTTATGATTTTGCAACAGCTGAATATCGGAAATAGTTAGTGACGAACATCAGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTAGCTCCTTTTACTTGTGGTAATTGAGGGATAAcaacaa                                                                                                                                           <  2:133768/140‑1 (MQ=255)  aaaTTATTTTTCCAGTTTTTTGATTTTTCAACAGCTGAATATCCGCAATAGTCACTGACGAACATCAGTATTTTTCCATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAAcaacaa                                                                                                                                           <  2:243957/143‑1 (MQ=255)      tagttttCGAGTTTTGGGAGTTTGCAACAGCTGAATATCGGAAATAGTCACTTACTAACATCAGTATTTTGACAGAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTTTGGTAATTGAGGGATAACAACaaaaaa                                                                                                                                       <  2:589119/140‑1 (MQ=255)      atattatggtgcgcgaagcgtacttccagcgtcatgatttcatcgctaatggcggcgaactcaaaccgcaggaaaatccgaacgcacaagcgattcaggatgatttaaaagatattgattctgaataagaaacaaataaaaaa                                                                                                                                       >  1:333077‑M1/138‑143 (MQ=255)      atattatggtgcgcgaagcgtacttccagcgtcatgatttcatcgctaatggcggcgaactcaaaccgcaggaaaatccgaacgcacaagcgattcaggatgatttaaaagatattgattctgaataagaaacaaataaaaaa                                                                                                                                       >  2:598569‑M1/138‑143 (MQ=255)        attatggtgcgcgaagcgtacttccagcgtcatgatttcatcgctaatggcggcgaactcaaaccgcaggaaaatccgaacgcacaagcgattcaggatgatttaaaagatattgattctgaataagaaacaaatAAAAAAgg                                                                                                                                     <  2:188812‑M1/8‑1 (MQ=255)         gtttCCAGTTTTTTGATTTTGCAACAGCGGAATATCGGAAATAGTTAGTGACGAACATCAGTATTTTTACATAATTACGGCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGt                                                                                                                                    <  2:172402/142‑1 (MQ=255)          tttCCAGTTTTTTGATTTTTCAACAGCTGAATATCGGAAATAGTCAGTGACGAACATCAGTATTTTTACATAATTACGTATAGGTCATTGTCGGTTTATATCTTTTTACTTGTGGTAATTGAGGGATAACCACAAAAAAGGtc                                                                                                                                   >  2:394703/1‑142 (MQ=255)           ttCCAGTTTTTTGATTTTTCAACAGCTGAATATCGGAAATAGTCAGTGACGAACATCAGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGa                                                                                                                                  >  2:244008/1‑143 (MQ=255)           ttCCAGTTTTTTGATTTTTCAACAGCTGAATATCGGAAATAGTCAGTGACGAACATCAGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGa                                                                                                                                  >  2:763415/1‑143 (MQ=255)                    tttGATTTTTCAACAGCTGAATATCGGAAATAGTCAGTGACGAACATCAGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGa                                                                                                                         <  1:521619/143‑1 (MQ=255)                    tttGATTTTTCAACAGCTGAATATCGGAAATAGTCAGTGACGAACATCAGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGa                                                                                                                         <  1:539601/143‑1 (MQ=255)                    tatGAGTTTTCAATAGCTGAATATCGGAAATAGTCAGTGACGAACATCAGTATTTTTACATAATTACGTATAGATCATTGTCGGTTTATCTTCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGa                                                                                                                         <  2:440127/141‑1 (MQ=255)                     ttGATTTTTCAACAGCTGAATATCGGAAATAGTCAGTGACGAACATCAGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGAc                                                                                                                        <  1:828561/143‑1 (MQ=255)                            ttCAACAGCTGAATATCGGAAATAGTCAGTGACGAACATCAGTATTTTTACATAATAACGTCTATGTGTTTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCtt                                                                                                                 >  2:689585/1‑143 (MQ=255)                              tccagcgtcatgatttcatcgctaatggcggcgaactcaaaccgcaggaaaatccgaacgcacaagcgattcaggatgatttaaaagatattgattctgaataagaaacaaatAAAAAAGGTGAGTTTTGCGACTCACCtttt                                                                                                               >  1:383383‑M1/114‑143 (MQ=255)                              cAATAGCTTAATATCGGAAATAGTCAGTGATGAACATCAGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCtttt                                                                                                               <  2:533136/143‑1 (MQ=255)                               aaCAGCTGAATATCGGAAATAGTCAGTGACGAACATCAGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCttttt                                                                                                              >  1:523865/1‑143 (MQ=255)                                   cgtcatgatttcatcgctaatggcggcgaactcaaaccgcaggaaaatccgaacgcacaagcgattcaggatgatttaaaagatattgattctgaataagaaacaaatAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTAtt                                                                                                          >  2:712852‑M1/109‑143 (MQ=255)                                    cTGAATATCGGAAATAGTCAGTGACGAACATCAGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTAttt                                                                                                         >  2:60737/1‑143 (MQ=255)                                       aaTATCGGAAATAGTCAGTGACGAACATCAGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGtt                                                                                                      >  1:630374/1‑143 (MQ=255)                                              gAAATAGTCAGTGACGAACATCAGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTAtt                                                                                               <  1:309675/143‑1 (MQ=255)                                              catcgctaatggcggcgaactcaaaccgcagtaaaatccgaacgcacaagcgattcaggatgatttaaaagatattgattctgaataagaaacaaatAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTAtt                                                                                               >  1:35247‑M1/98‑143 (MQ=255)                                                   aGTCCGTGACGAACTTCAGTTTTTTTACATAATTACGTGTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTTGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGaa                                                                                          <  2:794978/143‑1 (MQ=255)                                                    gTCAGTGACGAACATCAGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAAt                                                                                         >  1:654905/1‑143 (MQ=255)                                                          gACGAACATCAGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGGGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAatat                                                                                   >  2:11496/1‑143 (MQ=255)                                                              aaCATCAGTATGTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCttt                                                                               <  2:38941/143‑1 (MQ=255)                                                                  tcaaaccgcaggaaaatctgtacgcacaagcgattcattatgatttaaaagatattgattctgaataagaaacaaatAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTaaa                                                                           >  1:234780‑M1/78‑143 (MQ=255)                                                                  taaGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATATACATTTACTTGTGGTATTTGTAAAATAACAACTCGTTTGTTTACAATAGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTaaa                                                                           <  2:646615/141‑1 (MQ=255)                                                                  tCAGTATTTTTACATAATTCCGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTgaa                                                                           <  1:690371/143‑1 (MQ=255)                                                                   taGTTTTTTTACATAATTACGTCTAGGTCAGTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGCTATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAat                                                                          <  2:104611/142‑1 (MQ=255)                                                                    aGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAatc                                                                         >  1:900419/1‑143 (MQ=255)                                                                     gTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAatca                                                                        >  2:430084/1‑143 (MQ=255)                                                                     gTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTAAGAATCAATATCTTTTAAatca                                                                        >  2:325069/1‑143 (MQ=255)                                                                            ggaaaacccgaacgcacaagcgattcaggatgatttaaaagatattgattctgaataagaaacaaatAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGaa                                                                 >  1:31907‑M1/68‑143 (MQ=255)                                                                             aCATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGact                                                                >  1:695703/1‑141 (MQ=255)                                                                                    tACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTtgt                                                         <  2:629979/143‑1 (MQ=255)                                                                                          tAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGCCTCACGTTGTGTATTTGCTTCTTCTTCAGAATCAATATCTTTTAAATAATCGAGAATCGGTTGTGCGTTc                                                   >  1:464216/1‑143 (MQ=255)                                                                                          tAGGTAATTGTCGGTTTATCGCAGTATACTGAGGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTc                                                   <  1:28402/143‑1 (MQ=255)                                                                                          cacaagcgagaaaggataatttaaaagttagtgattctgaataagaaacatatAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTc                                                   >  2:416401‑M1/54‑143 (MQ=255)                                                                                                aTTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGAttt                                             <  1:394703/143‑1 (MQ=255)                                                                                                      ggTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGACTCGCTTGTCCGTTCGGATTTTCCTGc                                       >  1:420128/1‑143 (MQ=255)                                                                                                      ggTTTATCTCCTTGTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGc                                       <  1:834357/143‑1 (MQ=255)                                                                                                       gtgtATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCg                                      <  1:244008/140‑1 (MQ=255)                                                                                                       gTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCg                                      <  1:763415/143‑1 (MQ=255)                                                                                                              ttcTTTTACGTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAg                               <  2:600932/141‑1 (MQ=255)                                                                                                                    tACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTcgcc                         <  1:767542/143‑1 (MQ=255)                                                                                                                       ttGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTTCGGTTTGAGTTCgccgcc                      >  2:746892/1‑143 (MQ=255)                                                                                                                        tgtgGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCATGAAACGCTTGTGAGTTCGGAATTACCTGCTGTTTGAGTTCGCCGCCa                     >  2:222782/1‑143 (MQ=255)                                                                                                                         gtgGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCAt                    >  2:829654/1‑143 (MQ=255)                                                                                                                              aaTTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTCGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCg               <  1:765118/143‑1 (MQ=255)                                                                                                                                  gAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGa           <  1:132601/143‑1 (MQ=255)                                                                                                                                     ggATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAAt        >  1:802352/1‑143 (MQ=255)                                                                                                                                     ggATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTCTTCATCATCCTTATTTGTTTGAGAGAGCGAATTTTCCTGCGGTTTGACCTCGCCGCCATTAGCGATGaaac        >  2:402431/1‑142 (MQ=255)                                                                                                                                      gATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGacgtcctc       >  1:423277/1‑136 (MQ=255)                                                                                                                                           caacaaAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCATGAc  >  1:705126/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                           AAAATTATTTTTCCAGTTTTTTGATTTTTCAACAGCTGAATATCGGAAATAGTCAGTGACGAACATCAGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCATGAC  >  NC_000913/2464069‑2464349

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.