New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2464211 =	44 (0.960)	6 (0.150)	6/238	NT	14.0%	intergenic (+141/+41)	yfdF/mlaA	protein YfdF/intermembrane phospholipid transport system ‑ outer membrane lipoprotein MlaA
	?	NC_000913	2464243 =	34 (0.820)					intergenic (+173/+9)	yfdF/mlaA	protein YfdF/intermembrane phospholipid transport system ‑ outer membrane lipoprotein MlaA

GCTGAATATCGGAAATAGTCAGTGACGAACATCAGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCATGACGCTGGAAGTACGCTTCGCGCACCATAATATAAGGAT  >  NC_000913/2464103‑2464385                                                                                                                                             |                                                                                                                                               cgtcatgatttcatcgctaatggcggcgaactcaaaccgcaggaaaatccgaacgcacaagcgattcaggatgatttaaaagatattgattctgaataagaaacaaatAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTAtt                                                                                                                                              >  2:712852‑M1/109‑143 (MQ=255)  cTGAATATCGGAAATAGTCAGTGACGAACATCAGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTAttt                                                                                                                                             >  2:60737/1‑143 (MQ=255)     aaTATCGGAAATAGTCAGTGACGAACATCAGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGtt                                                                                                                                          >  1:630374/1‑143 (MQ=255)            gAAATAGTCAGTGACGAACATCAGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTAtt                                                                                                                                   <  1:309675/143‑1 (MQ=255)            catcgctaatggcggcgaactcaaaccgcagtaaaatccgaacgcacaagcgattcaggatgatttaaaagatattgattctgaataagaaacaaatAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTAtt                                                                                                                                   >  1:35247‑M1/98‑143 (MQ=255)                 aGTCCGTGACGAACTTCAGTTTTTTTACATAATTACGTGTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTTGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGaa                                                                                                                              <  2:794978/143‑1 (MQ=255)                  gTCAGTGACGAACATCAGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAAt                                                                                                                             >  1:654905/1‑143 (MQ=255)                        gACGAACATCAGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGGGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAatat                                                                                                                       >  2:11496/1‑143 (MQ=255)                            aaCATCAGTATGTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCttt                                                                                                                   <  2:38941/143‑1 (MQ=255)                                tcaaaccgcaggaaaatctgtacgcacaagcgattcattatgatttaaaagatattgattctgaataagaaacaaatAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTaaa                                                                                                               >  1:234780‑M1/78‑143 (MQ=255)                                taaGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATATACATTTACTTGTGGTATTTGTAAAATAACAACTCGTTTGTTTACAATAGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTaaa                                                                                                               <  2:646615/141‑1 (MQ=255)                                tCAGTATTTTTACATAATTCCGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTgaa                                                                                                               <  1:690371/143‑1 (MQ=255)                                 taGTTTTTTTACATAATTACGTCTAGGTCAGTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGCTATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAat                                                                                                              <  2:104611/142‑1 (MQ=255)                                  aGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAatc                                                                                                             >  1:900419/1‑143 (MQ=255)                                   gTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAatca                                                                                                            >  2:430084/1‑143 (MQ=255)                                   gTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTAAGAATCAATATCTTTTAAatca                                                                                                            >  2:325069/1‑143 (MQ=255)                                          ggaaaacccgaacgcacaagcgattcaggatgatttaaaagatattgattctgaataagaaacaaatAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGaa                                                                                                     >  1:31907‑M1/68‑143 (MQ=255)                                           aCATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGact                                                                                                    >  1:695703/1‑141 (MQ=255)                                                  tACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTtgt                                                                                             <  2:629979/143‑1 (MQ=255)                                                   gaacgcacaagcgattcaggatgatttaaaagatattgattctgaataagaaacaaataaaaaaggtgagtcgcaaaactcaccttttttATATGTTTCTTATTCAGAATCACTAACTTTTAAATTATCCTTTCTCGCTtgtg                                                                                            >  2:416401‑M2/91‑143 (MQ=255)                                                        tAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGCCTCACGTTGTGTATTTGCTTCTTCTTCAGAATCAATATCTTTTAAATAATCGAGAATCGGTTGTGCGTTc                                                                                       >  1:464216/1‑143 (MQ=255)                                                        tAGGTAATTGTCGGTTTATCGCAGTATACTGAGGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTc                                                                                       <  1:28402/143‑1 (MQ=255)                                                        cacaagcgagaaaggataatttaaaagttagtgattctgaataagaaacatatAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTc                                                                                       >  2:416401‑M1/54‑143 (MQ=255)                                                              aTTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGAttt                                                                                 <  1:394703/143‑1 (MQ=255)                                                                 ttcaggatgatttaaaagatattgattctgaataagaaacaaataaaaaaggtgagtcgcaaaactcaccttttttATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGGTTTTcc                                                                              >  1:31907‑M2/77‑143 (MQ=255)                                                                    ggTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGACTCGCTTGTCCGTTCGGATTTTCCTGc                                                                           >  1:420128/1‑143 (MQ=255)                                                                    ggTTTATCTCCTTGTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGc                                                                           <  1:834357/143‑1 (MQ=255)                                                                     gtgtATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCg                                                                          <  1:244008/140‑1 (MQ=255)                                                                     gTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCg                                                                          <  1:763415/143‑1 (MQ=255)                                                                           tttaaaagatattgattctgaataagaaacaaataaaaaaggtgagtcgcaaaactcaccttttttATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATAATGAATCGCTTGTGCGTACAGATTTTCCTGCGGTTTGa                                                                    >  1:234780‑M2/67‑143 (MQ=255)                                                                            ttcTTTTACGTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAg                                                                   <  2:600932/141‑1 (MQ=255)                                                                                  tACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTcgcc                                                             <  1:767542/143‑1 (MQ=255)                                                                                     ttGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTTCGGTTTGAGTTCgccgcc                                                          >  2:746892/1‑143 (MQ=255)                                                                                      tgtgGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCATGAAACGCTTGTGAGTTCGGAATTACCTGCTGTTTGAGTTCGCCGCCa                                                         >  2:222782/1‑143 (MQ=255)                                                                                       gtgGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCAt                                                        >  2:829654/1‑143 (MQ=255)                                                                                            aaTTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTCGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCg                                                   <  1:765118/143‑1 (MQ=255)                                                                                               aataagaaacaaataaaaaaggtgagtcgcaaaactcaccttttttATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTACTGCGGTTTGAGTTCGCCGCCATTAGCGATg                                                >  1:35247‑M2/47‑143 (MQ=255)                                                                                                gAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGa                                               <  1:132601/143‑1 (MQ=255)                                                                                                   ggATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAAt                                            >  1:802352/1‑143 (MQ=255)                                                                                                   ggATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTCTTCATCATCCTTATTTGTTTGAGAGAGCGAATTTTCCTGCGGTTTGACCTCGCCGCCATTAGCGATGaaac                                            >  2:402431/1‑142 (MQ=255)                                                                                                    gATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGacgtcctc                                           >  1:423277/1‑136 (MQ=255)                                                                                                         caacaaAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCATGAc                                      >  1:705126/1‑143 (MQ=255)                                                                                                          aataaaaaaggtgagtcgcaaaactcaccttttttATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCATGACg                                     >  2:712852‑M2/36‑143 (MQ=255)                                                                                                               aaaaggtgagtcgcaaaactcaccttttttATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCATGACGCTGGa                                >  1:383383‑M2/31‑143 (MQ=255)                                                                                                               AAAAGGTGAATTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCAGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCATGACGCTGGa                                >  2:61095‑M1/1‑143 (MQ=255)                                                                                                                AAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCATGACGCTGGaa                               >  2:743623‑M1/1‑143 (MQ=255)                                                                                                                AAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAAGCATCCTGAATCGCTGGCTGGTGGGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCATGACGCTGGaa                               >  2:600115‑M1/1‑143 (MQ=255)                                                                                                                        GTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCCATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCGTGCGGCTGGACGTACGCtt                       <  1:769565‑M1/143‑1 (MQ=255)                                                                                                                          tttGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCATGACGCTGGAAGTACGCTTcg                     <  1:430084/143‑1 (MQ=255)                                                                                                                          tttGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTGAAAGCAGCCTGACTCGCTTGGGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCATGACGCTGGAAGTACGCTTcg                     <  2:684653/143‑1 (MQ=255)                                                                                                                            tGCGACCCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCATGACGCTGGAAGTACGCTTcgcg                   <  1:212989/143‑1 (MQ=255)                                                                                                                                     ccttttttATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCATGACGCTGGAAGTACGCTTCGCGCACCataat          <  2:188812‑M2/135‑1 (MQ=255)                                                                                                                                       ttttttATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCATGACGCTGGAAGTACGCTTCGCGCACCATAatat        >  2:598569‑M2/7‑143 (MQ=255)                                                                                                                                       ttttttATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCATGACGCTGGAAGTACGCTTCGCGCACCATAatat        >  1:333077‑M2/7‑143 (MQ=255)                                                                                                                                        gttttGTTTGTTTCTTATTCAGAATCAAAATATTTTAAATCATCCTGAATCACTTGTACGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGGCATTAGCGATGAACTCTTGACGCTGGAAGTACGATTCGCGCAACACAAtata       >  2:235785/2‑143 (MQ=255)                                                                                                                                             aTTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCATGACGCTGGAAGTACGCTTCGCGCACCATAATATAAGGAt  <  1:325069/143‑1 (MQ=255)                                                                                                                                             |                                                                                                                                               GCTGAATATCGGAAATAGTCAGTGACGAACATCAGTATTTTTACATAATTACGTCTAGGTCATTGTCGGTTTATCTCCTTTTACTTGTGGTAATTGAGGGATAACAACAAAAAAGGTGAGTTTTGCGACTCACCTTTTTTATTTGTTTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCCTGCGGTTTGAGTTCGCCGCCATTAGCGATGAAATCATGACGCTGGAAGTACGCTTCGCGCACCATAATATAAGGAT  >  NC_000913/2464103‑2464385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.