New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2640658 =	51 (1.110)	3 (0.070)	3/248	NT	6.1%	intergenic (‑83/+28)	hisS/ispG	histidine‑‑tRNA ligase/(E)‑4‑hydroxy‑3‑methylbut‑2‑enyl‑diphosphate synthase (flavodoxin)
	?	NC_000913	2640677 =	45 (1.050)					intergenic (‑102/+9)	hisS/ispG	histidine‑‑tRNA ligase/(E)‑4‑hydroxy‑3‑methylbut‑2‑enyl‑diphosphate synthase (flavodoxin)

GGCCGTTTCGCCAGGCAGGTAATCGTTCATGCCGCGAATGGCTTGAATGTTTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTGGTCGATCATATCGTTGTTGTCCAGA  >  NC_000913/2640516‑2640791                                                                                                                                               |                                                                                                                                      ctatgaagatggcgtgcgcaaagaccgtctggaagacaacgatatgatcgaccagctggaagcacgcattcgtgcgaaagccagtcagctggacgaagcgcgtcgaaatgacgttcaggaggctgaaagagaataacctgatg                                                                                                                                       <  2:38766‑M1/1‑1 (MQ=255)   ccGTTTCGCCAGGCAGGTAATCGTTCATGCCGCGAATGGCTTGAATGTTTTTTGCCACGTTTATTCTCTTTTTGAGTGTCCGGTCGAACCCGCAACGCTTCCTTCAATGTTTCGGGGGTCATGCGGGTTCAATCATGCACggg                                                                                                                                     >  1:418764/1‑143 (MQ=255)   ccGTTCCGCCAGGCAGGTAATCGTTCATGCCGCGAATGGCTTGAATGTTTTTTGCCACGTTTATTCTCTTTCCGCCCCCTAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACggg                                                                                                                                     <  1:127793/143‑1 (MQ=255)    cGTTTCGCCAGGCAGGTAATCGTTCATGCCGCGAATGGCTTGAATGTTTTTTGCCACGTTTGTTGTGTTGCGGAACACAAAACCTTTCCTTTTGCTGGTTCTTTAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGa                                                                                                                                    <  1:421545/143‑1 (MQ=255)       tttgCCGGGCAGGTAATCTTTCATGCCGCTATTGGCTTTAATGTTTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATTAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGc                                                                                                                                 <  2:421217/140‑1 (MQ=255)          gCCAGGCAGGTAATCGTTCATGCCGCGAATGGCTTGAATGTTTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGTGAGCCATGCGGGTGCAATCATACACGGGAAGGGAg                                                                                                                              >  2:618957/1‑143 (MQ=255)          gCCAGGCAGGTAATCGTTCATGCCGCGAATGGCTTGAATGTTTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAg                                                                                                                              <  1:254790/143‑1 (MQ=255)           ccAGGCAGGTAATCGTTCATGCCGCGAATGGCTTGAATGTGTTTTGCCAGGTTTATTCTCTGTCTGAATATAAAAATGAACCGTCAACGCTTGCCTCAACGAGTCGGGGGCCATGCGGGATCGATCATACACGGGAGGCGAgg                                                                                                                             >  2:489660/1‑143 (MQ=255)                caggTAATCGTTCATGCCGCGAATGGCTTGAATGTTTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCGATCATTCACGGGTGGCGGGGCGCtt                                                                                                                        >  1:4456/1‑143 (MQ=255)                  ggTAACCGTTCATGCCTCGAATGGCTTGAATGTTTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTcc                                                                                                                      <  2:427812/143‑1 (MQ=255)                           tCATGCCGCGAATGGCTTGAATGTTTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGtt                                                                                                             <  1:109479/143‑1 (MQ=255)                           ccATGCCCCGAAGGGCTTGATTGTTGGTTGCCACGTTCATTCGCTTTCTGAATAGAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGtt                                                                                                             <  2:680068/142‑1 (MQ=255)                             aTGCCGCGAATGGCTTGAATGTTTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGCTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGttat                                                                                                           >  1:317580/1‑143 (MQ=255)                               gCCGCGAATGGCTTGAATGTTTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCCCGttatta                                                                                                         >  1:679397/1‑143 (MQ=255)                                ccGCGAATGGCTTGAATGTTTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCGCTCGAGGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGttattgt                                                                                                        <  1:819473/143‑3 (MQ=255)                                ccGCGAATGGCTTGAATGTTTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTtattat                                                                                                        >  1:850723/1‑143 (MQ=255)                                    gAATGGCTTGAATGTTTTTTGCCACGTGTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCTCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTAttttt                                                                                                    <  1:696728/143‑1 (MQ=255)                                     aaTGGCTTGAATGTTTTTTGCCACGTTTATTCTCTTCCTGAATATAAAAATGAACCCTCAACGCTGCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTc                                                                                                   <  1:800830/143‑1 (MQ=255)                                       tGGCTTGAATGTTCTCTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGTAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCaa                                                                                                 <  1:375700/143‑1 (MQ=255)                                         gCTTGAATGTTTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCATCTATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCATCGCAGCACGCTATTATTTCTCAAcc                                                                                               >  2:709370/1‑143 (MQ=255)                                          cTTGAATGTTTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGGTATTATTTTTCAAccg                                                                                              >  2:868932/1‑142 (MQ=255)                                           ttGAATGTTTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGTGAAGCGAGGCGCTTACCATCCCGCTCTTATTTTTCCAcaca                                                                                             >  2:163141/1‑140 (MQ=255)                                           ttGAATGTGTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACctg                                                                                             <  1:468318/143‑1 (MQ=255)                                                 tctctttGCCGCGTCAAGTCTCTTTCGCAATATAAAAATGAACCCTCAACGCTCCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAAc                                                                                       <  1:70450/139‑1 (MQ=255)                                                     ttttCCACGTTTACTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCa                                                                                   <  1:316091/143‑1 (MQ=255)                                                          cACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCg                                                                              >  1:279434/1‑143 (MQ=255)                                                              tttATTCGCTTTCTGAAGATAAAAAGGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGAcgc                                                                          <  1:446918/143‑1 (MQ=255)                                                                    ctctTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCg                                                                    <  2:827446/143‑1 (MQ=255)                                                                       tttCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTGTCGGGAGCCAAACAGGATCAATCATACACAGGAAGCGAGGCGCATCCCAGCACGTCATTAATTTTCAACCCGCAGCACGTCAATTCGAAGAGACTCGTcc                                                                 >  2:463533/1‑143 (MQ=255)                                                                         tCTGCATATAAAAATCAACCCTCACCGCTTCCCTCACTGTCTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCCCGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAg                                                               <  1:775567/143‑1 (MQ=255)                                                                                  aaaaaGGAACCCTCAACGCGTCCCCCAACGGTTCGGGAGCCATGCGGGTTCAATCATACCAGGCCATATATTCTCCGCCAACCAAGTATCGATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGc                                                      <  1:911757/143‑1 (MQ=255)                                                                                       ggAACCCTCAACGCGTCCCTCAATGTTTCGTGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCg                                                 <  1:638533/142‑1 (MQ=255)                                                                                           cccTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGATGCGCTTCGTCCAGCTGACTGGCTTTCGCACg                                             <  1:744192/143‑1 (MQ=255)                                                                                              tCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCCGACTGGCTTTCGCACGAAt                                          >  1:77420/1‑143 (MQ=255)                                                                                              tCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGAGAAGCGAGGCGCTTCCCATCACGTTATTATGTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGCAt                                          >  2:84363/1‑143 (MQ=255)                                                                                               cAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGCGGCGCTTCCCATCACGTTATCATTTTTCGTCCTGCTGCACGTACATTCGACGCGCTTCATCCAGCTCACTGGCTTTCGCACGACTg                                         >  2:436630/1‑143 (MQ=255)                                                                                                  cGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGt                                      >  1:293638/1‑143 (MQ=255)                                                                                                    cTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGc                                    <  2:605076/143‑1 (MQ=255)                                                                                                     cgtcgaattgacgttcagcaggttgaaaaataataacgtgatGGGAAGCGAGGCGCTTCCCATCACGtt                                                                                                             <  1:79256‑M1/27‑1 (MQ=255)                                                                                                     cgtcgaattgacgttcagcaggttgaaaaataataacgtgatGGGAAGCGAGGCGCTTCCCATCACGtt                                                                                                             >  2:79256‑M1/43‑69 (MQ=255)                                                                                                         cTCAATCTTTCGCCAGCCATGCAGGTTCAATCATACACGGGAAGCGAGGCGTTTCCCATCACGTTATTATTTTTCAACTTTCTGTACGTCAATTCGACGCGCTTCGTCCAGCGGACTGGCTTTCGCACGCATTCGTGcgaaag                               <  1:32754/143‑6 (MQ=255)                                                                                                            aaTGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTACGTCCACCTCACTGACCATCGCACGAGCGCGCGCTTCCCGCt                            >  2:225368/1‑143 (MQ=255)                                                                                                            aaTGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGAGCTTACCAACACGTGATTCTTTTTCAACCCGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAACGCGTGCTCCCAGcc                            >  2:383211/1‑142 (MQ=255)                                                                                                             acgcatCGCGAGCCATGCGGGTTCAACCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCACCCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTg                           <  1:134006/138‑1 (MQ=255)                                                                                                              gacgttcagcaggttgaaaaataataacgtgacGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTgg                          <  1:817721‑M1/110‑1 (MQ=255)                                                                                                               ttgtCGTGAGCCATGCTGGCTCAATCATACACCTCCAGCGAGGCGTGTCCCATCACGTTATTATTTTTCAACCTGCTGAACTTCAATCCGACGCGCTTCGTCCAGCTGACTGTCTTTCGCACGAATGCGTGCTTCCAGCTGGt                         <  2:580696/140‑1 (MQ=255)                                                                                                                tttCGGGCGCCATGCGGTTTCAATCATACACGCGAACCGAGGCGCTTCCTATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCATCTGACTGGCTTTCTCACGAATGCGTGCTTCCAGCTGGTc                        <  2:86382/143‑1 (MQ=255)                                                                                                                tttCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCACCCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGCATGCGTGCTTCCCGCTGGTc                        >  1:795212/1‑143 (MQ=255)                                                                                                                ttgcGGTAGCCAGGCGGGTTTATTCATACGCGGGAAGGGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGATCGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTGGTc                        <  2:485482/140‑1 (MQ=255)                                                                                                                  tCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTGGTCGa                      >  1:438367/1‑143 (MQ=255)                                                                                                                   cgtgAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTGGTCGAt                     <  1:430393/140‑1 (MQ=255)                                                                                                                    gggAGCCATGCGGGTTCAATCATACACGGGAGGCGTGGCGCGTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTGGTCGATc                    <  2:685939/143‑1 (MQ=255)                                                                                                                    gggAGCCAAGCGGGTTCAATCAGAGACGGCAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTGGTCGATc                    <  1:275361/143‑1 (MQ=255)                                                                                                                           aTGCGGGTGGAAGCATACAGGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTGGTCGATCATATCgt             <  1:485986/143‑1 (MQ=255)                                                                                                                            tGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGACCGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTGGGCGGAACGCGTGCTTGCACCTGGCCGATCATATCgct            >  2:878616/1‑141 (MQ=255)                                                                                                                                      atcatcCACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCACCCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTGGTCGATCATATCGTTGTTGTCCAGa  <  1:237575/143‑1 (MQ=255)                                                                                                                                      aTCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACAAATGCGTGCTTCCAGCTCGTCCATCATCATGTCGTTGTCCaca  >  2:136700/1‑141 (MQ=255)                                                                                                                                      aTCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCCGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTGGTCGATCATATCGTTGTTGTCCAGa  <  2:77420/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                      GGCCGTTTCGCCAGGCAGGTAATCGTTCATGCCGCGAATGGCTTGAATGTTTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTGGTCGATCATATCGTTGTTGTCCAGA  >  NC_000913/2640516‑2640791

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.