| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2640658 = | 51 (1.110) | 3 (0.070) | 3/248 | NT | 6.1% | intergenic (‑83/+28) | hisS/ispG | histidine‑‑tRNA ligase/(E)‑4‑hydroxy‑3‑methylbut‑2‑enyl‑diphosphate synthase (flavodoxin) |
| ? | NC_000913 | 2640677 = | 45 (1.050) | intergenic (‑102/+9) | hisS/ispG | histidine‑‑tRNA ligase/(E)‑4‑hydroxy‑3‑methylbut‑2‑enyl‑diphosphate synthase (flavodoxin) | |||||
TCATGCCGCGAATGGCTTGAATGTTTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTGGTCGATCATATCGTTGTTGTCCAGACGGTCTTTGCGCACGCCATCTTCATAGA > NC_000913/2640542‑2640819 | tCATGCCGCGAATGGCTTGAATGTTTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGtt < 1:109479/143‑1 (MQ=255)ccATGCCCCGAAGGGCTTGATTGTTGGTTGCCACGTTCATTCGCTTTCTGAATAGAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGtt < 2:680068/142‑1 (MQ=255) aTGCCGCGAATGGCTTGAATGTTTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGCTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGttat > 1:317580/1‑143 (MQ=255) gCCGCGAATGGCTTGAATGTTTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCCCGttatta > 1:679397/1‑143 (MQ=255) ccGCGAATGGCTTGAATGTTTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCGCTCGAGGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGttattgt < 1:819473/143‑3 (MQ=255) ccGCGAATGGCTTGAATGTTTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTtattat > 1:850723/1‑143 (MQ=255) gAATGGCTTGAATGTTTTTTGCCACGTGTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCTCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTAttttt < 1:696728/143‑1 (MQ=255) aaTGGCTTGAATGTTTTTTGCCACGTTTATTCTCTTCCTGAATATAAAAATGAACCCTCAACGCTGCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTc < 1:800830/143‑1 (MQ=255) tGGCTTGAATGTTCTCTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGTAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCaa < 1:375700/143‑1 (MQ=255) gCTTGAATGTTTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCATCTATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCATCGCAGCACGCTATTATTTCTCAAcc > 2:709370/1‑143 (MQ=255) cTTGAATGTTTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGGTATTATTTTTCAAccg > 2:868932/1‑142 (MQ=255) ttGAATGTTTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGTGAAGCGAGGCGCTTACCATCCCGCTCTTATTTTTCCAcaca > 2:163141/1‑140 (MQ=255) ttGAATGTGTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACctg < 1:468318/143‑1 (MQ=255) tctctttGCCGCGTCAAGTCTCTTTCGCAATATAAAAATGAACCCTCAACGCTCCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAAc < 1:70450/139‑1 (MQ=255) ccagctggaagcacgcattcgtgcgaaagccagtcagctggacgaagcgcgtcgaattgacgttcagcaggttgaaaaataataacgtgatgggaagcgcctcgcttcccGTCACGTTATTATTTTTCAACCTGCTGAACGTc < 1:817721‑M2/33‑1 (MQ=255) ttttCCACGTTTACTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCa < 1:316091/143‑1 (MQ=255) cACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCg > 1:279434/1‑143 (MQ=255) tttATTCGCTTTCTGAAGATAAAAAGGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGAcgc < 1:446918/143‑1 (MQ=255) ctctTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCg < 2:827446/143‑1 (MQ=255) tttCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTGTCGGGAGCCAAACAGGATCAATCATACACAGGAAGCGAGGCGCATCCCAGCACGTCATTAATTTTCAACCCGCAGCACGTCAATTCGAAGAGACTCGTcc > 2:463533/1‑143 (MQ=255) tCTGCATATAAAAATCAACCCTCACCGCTTCCCTCACTGTCTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCCCGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAg < 1:775567/143‑1 (MQ=255) aaaaaGGAACCCTCAACGCGTCCCCCAACGGTTCGGGAGCCATGCGGGTTCAATCATACCAGGCCATATATTCTCCGCCAACCAAGTATCGATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGc < 1:911757/143‑1 (MQ=255) ggAACCCTCAACGCGTCCCTCAATGTTTCGTGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCg < 1:638533/142‑1 (MQ=255) cccTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGATGCGCTTCGTCCAGCTGACTGGCTTTCGCACg < 1:744192/143‑1 (MQ=255) tCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCCGACTGGCTTTCGCACGAAt > 1:77420/1‑143 (MQ=255) tCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGAGAAGCGAGGCGCTTCCCATCACGTTATTATGTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGCAt > 2:84363/1‑143 (MQ=255) cAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGCGGCGCTTCCCATCACGTTATCATTTTTCGTCCTGCTGCACGTACATTCGACGCGCTTCATCCAGCTCACTGGCTTTCGCACGACTg > 2:436630/1‑143 (MQ=255) cGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGt > 1:293638/1‑143 (MQ=255) cTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGc < 2:605076/143‑1 (MQ=255) cgtcgaattgacgttcagcaggttgaaaaataataacgtgatGGGAAGCGAGGCGCTTCCCATCACGtt < 1:79256‑M1/27‑1 (MQ=255) cgtcgaattgacgttcagcaggttgaaaaataataacgtgatGGGAAGCGAGGCGCTTCCCATCACGtt > 2:79256‑M1/43‑69 (MQ=255) cTCAATCTTTCGCCAGCCATGCAGGTTCAATCATACACGGGAAGCGAGGCGTTTCCCATCACGTTATTATTTTTCAACTTTCTGTACGTCAATTCGACGCGCTTCGTCCAGCGGACTGGCTTTCGCACGCATTCGTGcgaaag < 1:32754/143‑6 (MQ=255) aaTGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTACGTCCACCTCACTGACCATCGCACGAGCGCGCGCTTCCCGCt > 2:225368/1‑143 (MQ=255) aaTGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGAGCTTACCAACACGTGATTCTTTTTCAACCCGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAACGCGTGCTCCCAGcc > 2:383211/1‑142 (MQ=255) acgcatCGCGAGCCATGCGGGTTCAACCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCACCCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTg < 1:134006/138‑1 (MQ=255) gacgttcagcaggttgaaaaataataacgtgacGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTgg < 1:817721‑M1/110‑1 (MQ=255) ttgtCGTGAGCCATGCTGGCTCAATCATACACCTCCAGCGAGGCGTGTCCCATCACGTTATTATTTTTCAACCTGCTGAACTTCAATCCGACGCGCTTCGTCCAGCTGACTGTCTTTCGCACGAATGCGTGCTTCCAGCTGGt < 2:580696/140‑1 (MQ=255) tttCGGGCGCCATGCGGTTTCAATCATACACGCGAACCGAGGCGCTTCCTATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCATCTGACTGGCTTTCTCACGAATGCGTGCTTCCAGCTGGTc < 2:86382/143‑1 (MQ=255) tttCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCACCCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGCATGCGTGCTTCCCGCTGGTc > 1:795212/1‑143 (MQ=255) ttgcGGTAGCCAGGCGGGTTTATTCATACGCGGGAAGGGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGATCGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTGGTc < 2:485482/140‑1 (MQ=255) tCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTGGTCGa > 1:438367/1‑143 (MQ=255) cgtgAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTGGTCGAt < 1:430393/140‑1 (MQ=255) gggAGCCATGCGGGTTCAATCATACACGGGAGGCGTGGCGCGTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTGGTCGATc < 2:685939/143‑1 (MQ=255) gggAGCCAAGCGGGTTCAATCAGAGACGGCAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTGGTCGATc < 1:275361/143‑1 (MQ=255) aTGCGGGTGGAAGCATACAGGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTGGTCGATCATATCgt < 1:485986/143‑1 (MQ=255) tGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGACCGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTGGGCGGAACGCGTGCTTGCACCTGGCCGATCATATCgct > 2:878616/1‑141 (MQ=255) atcatcCACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCACCCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTGGTCGATCATATCGTTGTTGTCCAGa < 1:237575/143‑1 (MQ=255) aTCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACAAATGCGTGCTTCCAGCTCGTCCATCATCATGTCGTTGTCCaca > 2:136700/1‑141 (MQ=255) aTCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCCGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTGGTCGATCATATCGTTGTTGTCCAGa < 2:77420/143‑1 (MQ=255) aacgtgatgggaagcgcctcgcttcccATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGAcg > 2:79256‑M2/28‑69 (MQ=255) aacgtgatgggaagcgcctcgcttcccATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGAcg < 1:79256‑M2/42‑1 (MQ=255) cATCAGGTTATTCTCTTTCAGCCTCCTGAACGTCATTTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTGGTCGATCATATCGTTGTCTTCCAGACGGTCTTTGCGCACGCCATCTTCATAg < 2:38766‑M2/142‑1 (MQ=255) aTCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTGGTCGATCATATCGTTGTTGTCCAGACGGTCTTTGCGCACGCCATCTTCATagc > 1:636232/1‑142 (MQ=255) | TCATGCCGCGAATGGCTTGAATGTTTTTTGCCACGTTTATTCTCTTTCTGAATATAAAAATGAACCCTCAACGCTTCCCTCAATGTTTCGGGAGCCATGCGGGTTCAATCATACACGGGAAGCGAGGCGCTTCCCATCACGTTATTATTTTTCAACCTGCTGAACGTCAATTCGACGCGCTTCGTCCAGCTGACTGGCTTTCGCACGAATGCGTGCTTCCAGCTGGTCGATCATATCGTTGTTGTCCAGACGGTCTTTGCGCACGCCATCTTCATAGA > NC_000913/2640542‑2640819 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |