New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2731417 =	40 (0.870)	3 (0.070)	3/262	NT	7.1%	intergenic (‑260/+183)	rrsG/clpB	16S ribosomal RNA/ClpB chaperone
	?	NC_000913	= 3941550	39 (0.860)					intergenic (‑223/‑258)	yieP/rrsC	putative transcriptional regulator YieP/16S ribosomal RNA

TGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTC  >  NC_000913/2731278‑2731551                                                                                                                                            |                                                                                                                                       ttttatggcacattaacggggcttttgctgaaaaaatgcgcggtcagaaaattattttaaatttcctcttgtcaggccggaataactccctataatgcgccaccactgacacggaacaacggcaaacaccacgccgggtccgc                                                                                                                                     <  2:175954‑M1/4‑4 (MQ=255)  gTCGGAGAAAGTGTGAAAGAGCAGTGCCGCTTCGCCTTTCCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcggcg                                                                                                                                    <  1:433608/143‑1 (MQ=18)       atatcgtGTTATAGAGCAGTGCCGCTTCGCTTTTGCTCAGCGGCGCGGGGTGTGCATAATGCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTGTGTTGAGATTCGCAGGAGAACCCCGCCGACCCGGCGGCgtg                                                                                                                               <  2:116711/137‑1 (MQ=18)              gctAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCg                                                                                                                        <  1:771423/141‑1 (MQ=255)              gTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCCAGCCTTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACACCGCCGACCCGGCGTCGTGTTGGCCg                                                                                                                        >  2:872091/1‑143 (MQ=18)                tAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCgtt                                                                                                                      <  1:627241/143‑1 (MQ=255)                    ggtccgTGCCGCTTCGCTTGGTCTCGGCGGGTCGGGGTGTGCATACTACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTc                                                                                                                  <  2:206165/138‑1 (MQ=18)                         gTGCCGCTTCGCTTTTTCTCCGCGGCGCGGGGTGTGCATTATTCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCgtgt                                                                                                             <  2:469733/143‑1 (MQ=255)                                  cgcgtgttCTCAGCGGCGCGGGGTGTGCCTAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGCTTTTCTGGGGAGCCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGtggtgg                                                                                                    <  1:209095/137‑1 (MQ=18)                                      ttttCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGgcgcc                                                                                                >  2:700784/1‑142 (MQ=255)                                         tctcAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTAAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATta                                                                                             >  1:457329/1‑143 (MQ=255)                                           tcAGCTGCGCGGGGTGAGCATAATACGCCTTCCCGCTAGAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATtata                                                                                           <  1:68663/143‑1 (MQ=255)                                           tcAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGCGTCCGTGGTGgcgcggtacg                                                                                           >  2:825923/1‑137 (MQ=255)                                            ctccggctCGGTGTGTGTATTTTTCTCCTTTCCGCTACCGAGTCAAGTATTTCTTTGCTTTTCTCTGTGGAGATTCTCAGGAGCACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAg                                                                                          <  2:685035/140‑1 (MQ=17)                                               cggcgCGGGGTGTGCTTATTTCGCCTTCCCGCTACAGTGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGACCCCCGCCGTCCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGa                                                                                       <  2:715830/143‑1 (MQ=18)                                               cggcgCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGa                                                                                       <  1:498814/143‑1 (MQ=255)                                                      gggTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCCGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGAGGAGCCGTGTTAAAGGGCGTCAtcc                                                                                >  2:141692/1‑141 (MQ=18)                                                          gtgCATAGTACGCCTTCCCGCTACAGAGTCCAGCATGTCTTTGCGTTTCTCTGTTGAGATTCTCAGGAGACCCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGc                                                                            <  2:574247/143‑1 (MQ=17)                                                          gtgCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGc                                                                            <  1:838437/143‑1 (MQ=255)                                                           tgCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGcc                                                                           >  2:1686/1‑143 (MQ=255)                                                             cATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTg                                                                         >  1:894603/1‑143 (MQ=255)                                                             cATAATACGCCTTCCCACTACAGAGTCAAGAATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAACCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCCTCCCAGCGCTGGCGCATCATAGGCAGTTACTCCCGCCTg                                                                         >  2:617402/1‑143 (MQ=18)                                                                aataCGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCCGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACa                                                                      >  1:510244/1‑143 (MQ=255)                                                                                        aaGCATTTCGTTGCTTTTCTCTGTTGGGATGTGCGGGGGAGCGCCGCAGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATc                                              <  2:527197/143‑1 (MQ=18)                                                                                        aaGCATTGCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATc                                              <  1:498147/143‑1 (MQ=255)                                                                                               tCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCt                                       >  1:915801/1‑143 (MQ=255)                                                                                                     caccactgacacggaacaacggcaaacacgccgccgggtCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAgtggtg                                                                                                     <  1:240866‑M1/36‑1 (MQ=255)                                                                                                     caccactgacacggaacaacggcaaacacgccgccgggtCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAgtggtg                                                                                                     >  2:240866‑M1/40‑75 (MQ=255)                                                                                                       tttCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCACTGGTGGCGCATTATAGGGAGTTATTCCGGCCTAACAAGCGAAAAATATACAAACTCTAGCGCTCGCTCACtttta                               >  2:669205/1‑142 (MQ=18)                                                                                                        ttCTCTTTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGATTGCCGTTGTTCCGAGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCa                              <  1:711052/143‑1 (MQ=255)                                                                                                        ttCTCTGTTGAGATTCTCAGGAGACCCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCa                              <  1:128770/143‑1 (MQ=255)                                                                                                        ttCTCTGTTGAGATTCTCAGGAGAACCCCGCCGGCCCGGAGGCGTTTTTGCCGTTGTTACGTGTCGGTGGTGGCGCATTATAGGGGGTTATTGCGGCCTTACAAGCGAATAATAGCCAACATTTGTCCTTCGCTCACtctgcc                              >  1:84417/1‑138 (MQ=17)                                                                                                         tctcTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAg                             >  2:725543/1‑143 (MQ=255)                                                                                                         tctcTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTGTGCCGTTGTTCCGTGGCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAg                             <  1:141837/143‑1 (MQ=255)                                                                                                               ttGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCCTTATAGGGAGTTATTCCGGCCTGCCAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTAAGGCgaaa                       >  1:60120/1‑143 (MQ=255)                                                                                                                tGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTGGAGGGAGATCATCCGTGCTGCCAAGCGAAAAATATACAAACTCTGTCGTTCGCTAACGTCTCGGGCCAAAc                      >  2:688167/1‑143 (MQ=17)                                                                                                                 gagaTTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAGAACa                     >  1:26977/1‑143 (MQ=255)                                                                                                                 gagaTTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAACATAAAAACTTTATCGTTCGCTCACTTTTCa                              <  2:160270/134‑1 (MQ=255)                                                                                                                 gagaTTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAACATAAAAACTTTATCGTTCGCTCACTTTTCa                              >  1:160270/1‑134 (MQ=255)                                                                                                                  agaTTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACAt                    <  1:379851/143‑1 (MQ=255)                                                                                                                        tcAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGCGTTATTCCGGCCTGACAAGCGCCAACTATAAACACTTTATCGTTCGCTCACTTGTCAGGCAAAACACCTTaaa              >  1:802393/1‑143 (MQ=18)                                                                                                                           caaacacgccgccgggtCGGCG‑‑‑TGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCGAAACATATTAAATATAGt        <  2:827734‑M1/126‑1 (MQ=255)                                                                                                                              gaACCCCGCCGCCCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGt        <  1:437937/143‑1 (MQ=255)                                                                                                                              gaACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAgc        >  2:178167/1‑142 (MQ=255)                                                                                                                                    cgccgACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTc  >  1:407242/1‑143 (MQ=255)                                                                                                                                            |                                                                                                                                       TGTCTGATAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTC  >  NC_000913/2731278‑2731551

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.