| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2731417 = | 40 (0.870) | 3 (0.070) | 3/262 | NT | 7.1% | intergenic (‑260/+183) | rrsG/clpB | 16S ribosomal RNA/ClpB chaperone |
| ? | NC_000913 | = 3941550 | 39 (0.860) | intergenic (‑223/‑258) | yieP/rrsC | putative transcriptional regulator YieP/16S ribosomal RNA | |||||
TTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTA‑TTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATC > NC_000913/3941412‑3941682 | ttttATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTA‑TTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACCACGCCGGGTccgc < 2:175954‑M2/143‑5 (MQ=255) ttATGGGCCAGTAACGGGGCTTTTGCTGAACAAATGCGCGGTCAGAAAATTA‑TTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCgg < 1:158812/143‑1 (MQ=255) tATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTA‑TTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGACCAACGGCAAACACGGCGCCGGGGCCGCggg > 2:500441/1‑143 (MQ=255) tATGGCACAGTAACGGGGCTGTTGCTGAAAAAATGCGCGGTCAGAAAATTA‑TTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCggg < 2:805674/143‑1 (MQ=255) gaTGGCACACTAACGGGGCTTTTGCTGAGAAAATGCGCGGTCAGAAAATTA‑TTTTAAAGTTGCTCTTGTCAGGCCGGAATAAGTCCCTATAAGGCGCCACCACTGACACGGGACAACGGCAAACACGCCGCCGGGTCAGCggg < 2:903038/142‑1 (MQ=17) tGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAACTTA‑TTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCCGCggggc > 2:847040/1‑142 (MQ=255) ggCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTTAGAAAATTA‑TTTTAAATTTCCTATTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGtt > 1:716549/1‑143 (MQ=255) acaTTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTA‑TTTTAAATTTCCTCTTGTCAAGCCGGAATAACTCCCTATAATGCCCCACCACTGCCACGGAACAACCGCCCACACGCCGCCGGGTCAGCGCCGTtctc > 2:100444/1‑143 (MQ=14) ggggCTTGTGCTGGAGGAATGCGCGGTCAGAAAATTA‑TTTTAAATTTCCTCTTGTCGGGCCGGAATAGCTCCCTATAACGCGCCACCACTGACACGGAACGACGGCAAGCACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAAc < 2:339615/143‑1 (MQ=11) gCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTA‑TTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTcc < 2:226974/143‑1 (MQ=38) tttGCTGAAAAAATGCGCGGTCAGAAAATTA‑TTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGc > 1:775511/1‑143 (MQ=35) gAAAAAATGCGCGGTCAGAAAATTATTTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACAAGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCagagg > 2:814920/1‑142 (MQ=2) gAAAAAATGCGCGGTCAGAAAATTA‑TTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGaa > 2:341312/1‑143 (MQ=11) agcccGGAATCACGCCCTAGAATGCGCCACCACTGACACGGAACAACGGCAATCACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATg < 2:224045/140‑1 (MQ=11) aaTAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACAccc > 1:363502/1‑143 (MQ=32) aaCTCCGTACGATGCGCCACCGGGGTCACGGAAGAACGCCAAACACGCCGCGGGGTCAGCGGGGTTCTGCTGCGTGCTCCGTCAGAGAAAGCAAGAATAAATGCTTGACTCTGTAGCTGGAAAGCGTATTATGCACACCCcgc < 2:908611/143‑1 (MQ=11) aaCTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCcgc < 1:892372/143‑1 (MQ=32) aaCTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGCAAGAGTAAACAAAATTGAGTGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCcgc > 1:417813/1‑143 (MQ=11) cTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATACATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCgcgc > 1:235677/1‑143 (MQ=17) cTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCgcgc < 1:725666/143‑1 (MQ=32) cTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGCCAGCGGGGATCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCCTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCcgccg > 2:380002/1‑141 (MQ=12) ccTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGCTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGcgccac > 2:225981/1‑141 (MQ=17) cTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCAGGGATCTCATGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCATGACAATGAAGCGGAAGAGCGTATTATGGACACACcgcgaggcg > 2:434059/1‑138 (MQ=11) aaTGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAACGCACAAATAAATGCTTGACTCTGTAGCGGGAAAACGTATTATGCACACACCACGCCGCTgaga > 1:729463/1‑143 (MQ=11) aaTGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTgaga < 1:643049/143‑1 (MQ=32) gcgcCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCAGCGCCACAGAGaaaa > 1:557112/1‑143 (MQ=12) caccacTGACACGGAACAACGGCAAACACGCCGCCGGGTcggcggcgtgtttgccgttgttccgtgtcagtggtg < 1:240866‑M2/75‑37 (MQ=255) caccacTGACACGGAACAACGGCAAACACGCCGCCGGGTcggcggcgtgtttgccgttgttccgtgtcagtggtg > 2:240866‑M2/1‑39 (MQ=255) ccacTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGCGAAgacgcaaa > 2:95336/1‑143 (MQ=16) cccgcacacGGAACAACGGCAAACACGCCGCCGGGTGAGCGCGCATCCGCCGATCGTGCCGGCAGAGAAAGCAAAGATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAaaagcaaag < 1:663657/138‑1 (MQ=11) cacTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGCGAAaaagcaaag > 1:263470/1‑143 (MQ=25) tGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGCgg > 1:790158/1‑143 (MQ=35) acGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGACAAACGGCACt > 1:613993/1‑143 (MQ=12) ccgaccaacGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGGAGCGGGAAAGCGTATTATACACACCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTg < 2:199559/138‑1 (MQ=255) acaacGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGctct < 1:220676/143‑1 (MQ=35) atggCAAACACGCCGCTGGGTCAGCGGGGTTCTCCTGAGTACTCCTGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTa < 2:330145/141‑1 (MQ=255) acGGCAAACACGGCGCCGCGTCAACGGCGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATGAATGCTCGACTCTTTAGCAGGAAAGCGTATTATTCACACCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTa < 2:363060/143‑1 (MQ=11) acGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTa > 1:102600/1‑143 (MQ=34) cGGCCAACACGCCGCCGGTTCAGCGGTGTTCTCCTGAGAACTCCTGCAGAGAAAGCAAAAATAAATGCTTGACGCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTaa < 2:134520/143‑1 (MQ=11) cAAACACGCCGCCGGGTcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagcgaaaaatataaaaactttatcgttcgctcacttttcaggcgaaacatattaaatatagt < 2:827734‑M2/143‑127 (MQ=255) agcacGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAAtt < 1:847040/141‑1 (MQ=25) aaCACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCCCTGAGCAAAAGCAAAGCGGCCCTGCTCTTTAACACtt > 1:3936/1‑143 (MQ=255) aaCACGCCGCCGGGTCAGCGGGGGTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCTTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAAtt < 1:341312/143‑1 (MQ=25) cgccccCGGGTCAGCGGGGTTCTCCTGCGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATc < 2:300234/143‑1 (MQ=21) | TTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTA‑TTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATC > NC_000913/3941412‑3941682 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |