New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3070076 =NA (NA)4 (0.090) 3/250 NT NA noncoding (26/29 nt) other REPv213b
?NC_000913 = 3512510 NA (NA)intergenic (‑166/+124) yhfZ/trpS putative DNA‑binding transcriptional regulator YhfZ/tryptophan‑‑tRNA ligase

ACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCAGTTCCTGGAATGCTTTCTCCAGACGAGCGAT  >  NC_000913/3069935‑3070218
                                                                                                                                             |                                                                                                                                              
ttatatcttcaggaatttgaagataaggcgcaacagcgagatgttgaaacggcgaggcacttcacattttttcggattattgcaaatgaggataaaaaaaccgggtttccccggtttcagagtgatgataaaagcaaaattGc                                                                                                                                               >  1:334261‑M1/142‑143 (MQ=255)
ttatatcttcaggaatttgaagataaggcgcaacagcgagatgtggaaacggcgaggcacttcacattttttcggattattgcaaatgaggataaaaaaaccgggtttccccggtttcagagtgctgatagaagcaaaattGc                                                                                                                                               <  1:325793‑M1/2‑1 (MQ=255)
ttatatcttcaggaatttgaagataaggcgcaacagcgagatgtggaaacggcgaggcacttcacattttttcggattattgcaaatgaggataaaaaaaccgggtctccccggtttcagagtgatgataaaagcaaaattGc                                                                                                                                               >  1:589456‑M1/142‑143 (MQ=255)
aCCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGc                                                                                                                                               <  2:749655/143‑1 (MQ=255)
 tatatcttcaggaatttgaagataaggcgcaacagcgagatgtggaaacggcgaggcacttcacattttttcggattattgcaaatgaggataaaaaaaccgggtttccccggtttcagagtgatgataaaagcaaaattGcc                                                                                                                                              >  1:757388‑M1/141‑143 (MQ=255)
 tatatcttcaggaatttgaagataaggcgcaacagcgagatgtggaaacggcgaggcacttcacattttttcggattagtgcaaattaggataaaaaaaccgggtttccccggtttcagagtgatgataaaagcaaaattGcc                                                                                                                                              >  2:384936‑M1/141‑143 (MQ=255)
  atatcttcaggaatttgaagataaggcgcaacagcgagatgtggaaacggcgaggcacttcacattttttcggattattgcaaatgaggataaaaaaaccgggtttccccggtttcagagtgatgataaaagcaaaattGCCt                                                                                                                                             <  2:428605‑M1/4‑1 (MQ=255)
    tGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATAGCAGGACACGTGTAGGCCTGa                                                                                                                                           >  1:535/1‑143 (MQ=255)
        tttGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAg                                                                                                                                       >  1:454013/1‑143 (MQ=255)
            gCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAAACTGCAAATTCAATATATTGCAGGAAACGTGTAGGACTGAGAAGCGTa                                                                                                                                   >  2:524129/1‑143 (MQ=255)
              gcaaaacTCGCCGGTGAGCGGGGCGCAGTCAGATCTCAGTGTGCGCTTTGGCATGCCGGATGCGGCGGGAACGCCTTAACCGGCCTACAAAAACCTGCAAAGTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAgc                                                                                                                                 <  1:334371/141‑1 (MQ=18)
                aaaaaTCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCATGCCAAACGCCGCGTGAACTCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAgcgc                                                                                                                               <  2:645527/143‑1 (MQ=37)
                 aaaaTCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCCGCCTACAAAAACCTGCAAATTCAATATATTGCAGGACACGTGTAAGCCTGATAAGCGTAgcgcc                                                                                                                              >  2:737401/1‑142 (MQ=255)
                 aaaaTACCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCATGCCGGATGCGGGGTGAACGCCTTATCCGGACTACAAAAACCTGCCAATTCAGAATATTGCAAGAGACGTGTGAGCCTGAGAAGCgaaaggca                                                                                                                              >  2:738464/1‑136 (MQ=255)
                  tagtCCCCGCAGAGCGGGGCTCCGACAGATATCCATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCAt                                                                                                                             <  2:466548/140‑1 (MQ=255)
                  aaaTCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCAt                                                                                                                             >  2:416606/1‑143 (MQ=255)
                    aTCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATCTATTACAAAATTCTTGTCGGACTGATAAGCGTAGCGCATCa                                                                                                                           <  2:408336/143‑1 (MQ=21)
                     gataaggcgcaacagcgagatgtggaaacggcgaggcacttcacattttttcggattattgcaaatgaggataaaaaaaccgggtttccccggtttcagagtgatgataaaagcaaaattGCCTGATAAGCGTAGCGCATCAg                                                                                                                          >  1:33604‑M1/121‑143 (MQ=255)
                     gataaggcgcaacagcgagatggggaaacggcgaggcacttcacattttttgggattattgcaaatgaggataaaaaaaccgggttgccccggtttcagagtgatgataaaagcaaaattGCCTGATAAGCGTAGCGCATCAg                                                                                                                          >  2:698939‑M1/121‑143 (MQ=255)
                       cccGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGc                                                                                                                        >  1:287131/1‑143 (MQ=255)
                       cccGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGc                                                                                                                        >  1:712105/1‑143 (MQ=255)
                        ccGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGACATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCCGGCa                                                                                                                       >  1:172110/1‑143 (MQ=255)
                         cGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCCGGATACGTGTAGGCCTGCTAAGCGCAGCGCATCAGGCac                                                                                                                      >  1:383676/1‑142 (MQ=255)
                             gagCGGGGCTCAGACAGATATCAGTGCGCGCGTTGTCCTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATACATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAAtttt                                                                                                                  <  2:888199/143‑1 (MQ=21)
                                cGGGGCTCAGACAGATATCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCt                                                                                                               >  1:561419/1‑143 (MQ=255)
                                   ggCTCAGGCAGAGAGCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCtttt                                                                                                            <  2:761042/143‑1 (MQ=255)
                                      tCAGACAGATATCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATCTTGCGTTTTGc                                                                                                         >  1:299519/1‑143 (MQ=255)
                                      tCAGACAGATATCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGc                                                                                                         >  1:595963/1‑143 (MQ=255)
                                       cagacagaTATCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCg                                                                                                        >  1:24817/1‑143 (MQ=255)
                                        agacagaTATCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCCTCAGGCCATTTTGCTTTTGGCGa                                                                                                       >  1:737154/1‑143 (MQ=255)
                                          acagaTATCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGcaa                                                                                                     >  2:280431/1‑143 (MQ=255)
                                           cggaTTTCAATGTGCGTTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGaaaa                                                                                                    <  2:4873/141‑1 (MQ=255)
                                               tatCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAg                                                                                                <  1:416606/143‑1 (MQ=255)
                                                atCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGa                                                                                               <  1:509895/143‑1 (MQ=255)
                                                 tCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAACAGAc                                                                                              >  2:195424/1‑143 (MQ=255)
                                                 tCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGAc                                                                                              >  2:56011/1‑143 (MQ=255)
                                                 tCAAGGTGCGCTTTGTCATGCCGGATGCTGAGGGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGAc                                                                                              <  1:85946/143‑1 (MQ=255)
                                                                 cATGCCGCAGGCGGCTTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCtt                                                                              <  1:846884/143‑1 (MQ=255)
                                                                       ggATGCGGCGGGAACGCCTTATCCGCCCTATAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATa                                                                        <  1:242399/143‑1 (MQ=255)
                                                                        gATGCGGCGTGAACGCCTTAGCCGGCCTACAAAAACCTGCAAATTCAATAGAGTGCAGGATAGGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATaa                                                                       <  1:457827/143‑1 (MQ=255)
                                                                             ggcgTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGa                                                                                                                                           >  1:375250/1‑70 (MQ=255)
                                                                             ggcgTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGa                                                                                                                                           <  2:375250/70‑1 (MQ=255)
                                                                              gggttaaCGCCTTACGCGGCCTGCAAAAGCCGGCAAAGCTACTATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGaa                                                                 <  2:125089/138‑1 (MQ=25)
                                                                                     cGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAata                                                          <  2:172110/143‑1 (MQ=255)
                                                                                       ccTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATc                                                        >  2:655960/1‑143 (MQ=255)
                                                                                        cTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTCGAGATAAGCAGAAAGGAATATCt                                                       >  2:682596/1‑143 (MQ=255)
                                                                                        cTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGAAAAAAAGACAAGTTGGCTTTTGGAGAAAAAAAGACCCGCAGAGCGGGCATTATGCAAAGCATAAAGGAATATca                                                       >  2:58556/1‑142 (MQ=21)
                                                                                            tCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTCAGATAAGCAGAAAGGAAAATCTTaga                                                   >  2:671650/1‑141 (MQ=255)
                                                                                            tCCGGCCTACAAAAACCTGCAAATTCAATATAGTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACa                                                   <  1:684688/143‑1 (MQ=255)
                                                                                                 ccTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCATAGCGCATCAGGCACTTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGAGGGCCTTGACATAAGAAGAAAGGAAGACCTAAGAGaaag                                              >  2:703380/1‑141 (MQ=25)
                                                                                                  caaCAAAACCCTGCAAAGTCAAGAGATTGCAGGATACGTGGAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTGGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATCTCTTACAGAActt                                             <  2:852097/141‑3 (MQ=37)
                                                                                                      aaaaaCCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGAt                                         >  1:138744/1‑143 (MQ=255)
                                                                                                       aaagCCTGCAAAGTCAAGACATGGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATc                                        <  1:54874/143‑1 (MQ=38)
                                                                                                        aaaCCTGCAAATTCAATATATTGCAGGATACGTGTAAGCCTTATAAGAGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAGGACCCGCAGAGCGGGCCCTGAGATAAGCAGAAGGGCATACCCTACAGACCGTCGACcg                                       >  2:277143/1‑143 (MQ=37)
                                                                                                            cTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGtt                                   <  2:874721/143‑1 (MQ=255)
                                                                                                              gcgaagtCAGTATATTGCAGGATACGTGTAAGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCa                                 <  2:464488/137‑1 (MQ=255)
                                                                                                                  tttCGATATAGTGCAGGATTCGTGTAGGTCTGATAAGTGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCAGTTc                             <  2:281228/142‑1 (MQ=39)
                                                                                                                            ttGCAGGTTACGTGTAGGCCTGATAAGCGGAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCAGTTCCTGGAATGCt                   <  2:17803/143‑1 (MQ=255)
                                                                                                                             tGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGCTGAGTTCCTGGAATGCtt                  >  2:721045/1‑143 (MQ=255)
                                                                                                                              gCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCAGTTCCTGGAATGCctt                 <  2:287131/143‑1 (MQ=255)
                                                                                                                               cAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCAGTTCCTGGAACGCTTtc                >  2:773523/1‑143 (MQ=255)
                                                                                                                                 aaaagcaaaattGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCtttt                                                                                                            <  2:243824‑M1/37‑1 (MQ=255)
                                                                                                                                 aaaagcaaaattGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCtttt                                                                                                            >  1:243824‑M1/13‑49 (MQ=255)
                                                                                                                                  gATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCAGTTCCTGGAATGCTTTCTcc             >  1:525586/1‑143 (MQ=255)
                                                                                                                                    tACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCAGTTCCTGGAATGCTTTCTCCAg           <  1:624894/143‑1 (MQ=255)
                                                                                                                                         gtAGGCCTGATAAGCGTAGCGCAGCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCAGTTCCTGGAATGCTTTCTCCAGACGAg      <  1:607826/143‑1 (MQ=255)
                                                                                                                                          tAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCAGTTCCTGGAATGCTTTCTCCAGACGAGc     >  1:594345/1‑143 (MQ=255)
                                                                                                                                             GCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCAGTTCCTGGAATGCTTTCTCCAGACGAGCGat  <  1:890127‑M1/143‑1 (MQ=255)
                                                                                                                                             GCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCAGTTCCTGGAATGCTTTCTCCAGACGAGCGat  >  1:722728‑M1/1‑143 (MQ=255)
                                                                                                                                             GCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATACCTTACAGAACGTCGATCGCGTTCAGTCCCTGGAATGCTCTCTCCAGACGAGCgac  <  2:176609‑M1/143‑2 (MQ=255)
                                                                                                                                             |                                                                                                                                              
ACCTTGCTTTTGGCGAAAAAATCCCCGCAGAGCGGGGCTCAGACAGATATCAATGTGCGCTTTGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACCTGCAAATTCAATATATTGCAGGATACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCTTTTGGCGAAAAAAAGACCCGCAGAGCGGGCCTTGAGATAAGCAGAAAGGAATATCTTACAGAACGTCGATCGCGTTCAGTTCCTGGAATGCTTTCTCCAGACGAGCGAT  >  NC_000913/3069935‑3070218

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.