New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3123446 =	39 (0.850)	3 (0.070)	3/260	NT	7.7%	coding (360/2172 nt)	glcB	malate synthase G
	?	NC_000913	3123486 =	34 (0.750)					coding (320/2172 nt)	glcB	malate synthase G

CGATAACCTGCTCACCGCGTTGCGGATCGTAGCCGCTGACCATCGCCCCTTCCTGCGGGATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTAT  >  NC_000913/3123304‑3123576                                                                                                                                                 |                                                                                                                                   cgttAACCTGCTCTCCGCGTTGCGGATCGTAGCCGCGTGCGATCGCTCCTTCCTGCGGGATGATGTCGCTGCGGTATAACGCAGCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGcc                                                                                                                                    <  1:203990/140‑1 (MQ=255)   ttcaggcagcgcttgatgagtggcatcgcagcaatccggggccggtaaaagataaagcggcctataaatctttcctgcgtgaactgggctacctggtgccgcaaccggagcgcgtgacggtggaaaccacgggcagtgacagc                                                                                                                                    <  1:132353‑M1/1‑1 (MQ=255)               ccGCGTTGCGGATCGTAGCCGCTGACCATCGCCCCTTCCTGCGGGATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGCTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGGACCACCAGcca                                                                                                                      >  2:388656/1‑141 (MQ=255)                cgcgTTGCGGATCGTAGCCGCTGACCATCGCCCCTTCCTGCGGGATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCC‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCCCCAGCTGc                                                                                                                     >  1:441879/1‑143 (MQ=255)                    ttGCGGATCGGAGCCGCTGACCATCGCCCCTCCCTGCGGGATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGcc                                                                                                                 <  1:496896/143‑1 (MQ=255)                        ggATCGTAGCCGCTGACCATCGCCCCTTCCTGCGGGATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGc                                                                                                             <  1:529758/143‑1 (MQ=255)                          aTCGTAGCCGCTGACCATCGCCCCTTCCTGCGGGATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCCTCGCCGGAACCACCAGCTGCGGcgccgcat                                                                                                           >  2:368122/1‑141 (MQ=255)                              tAGCCGCTGACCATCGCCCCTTCCTGCGGGATGATGTCGCTGCCGTATAACGCATCGTACCGGGAGCCCCAGCGAGCGTTCGCCGCGGTAC‑‑GCGAGGAGCGGGCGTCCATTGCCGGAACCACCACCTGCGGACCCCCccggcg                                                                                                       >  2:392915/1‑142 (MQ=255)                               aGCCGCTGACCGTCGCCCCTTCCTGCGGGATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCctggctg                                                                                                      <  2:699101/143‑1 (MQ=255)                                  cGCTGACCATCGCCCCTTCCTGCGGGATGATGTCGCTGCCGTATCACGCATCGTCCAGTCAGCGCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCTGCCCCGCCTGGctgctg                                                                                                   >  1:17124/1‑143 (MQ=255)                                  cGCTGACCATCGCCCCTTCCTGCGGGATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCctgggtgggg                                                                                                   >  1:330812/1‑141 (MQ=255)                                   gcggcccAGCGCCCCTTCCTGCGGGATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGa                                                                                                  <  1:440426/138‑1 (MQ=255)                                          aTCGCCCCTTCCTGCGGGATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCt                                                                                           <  1:197038/143‑1 (MQ=255)                                            cGCCCCTTCCTGCGGGATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGt                                                                                         <  1:801467/143‑1 (MQ=255)                                                     gataaagcggcctataaatctttcctgcgtgaactgggctacctggtgccgcaaccggagcgcgtgacggtggaaaccacgggcattgacagCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCt                                                                                           >  2:589106‑M1/93‑134 (MQ=255)                                                     gataaagcggcctataaatctttcctgcgtgaactgggctacctggtgccgcaaccggagcgcgtgacggtggaaaccacgggcattgacagCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCt                                                                                           <  1:589106‑M1/42‑1 (MQ=255)                                                     cTGCGGGATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCg                                                                                >  2:379649/1‑143 (MQ=255)                                                      tGCGGGCTGCGGTGGGTGCCGTATAACGCGTCGTACAGGGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTTCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGt                                                                               <  2:281922/143‑1 (MQ=255)                                                      tGCGGGATGCTGTCGCTGCCGTCTAACGCATCGTACAGTGAGCCCCCGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGt                                                                               <  2:865164/143‑1 (MQ=255)                                                      ataaagcggcctagaaatctttcctgcgtgcactggtctacccggtgccacaaccggagcgcgtgacggtggaacccacgggcattgacagCGAAATCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGccc                                                                                 >  2:358882‑M1/92‑143 (MQ=255)                                                          ggATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCTCGTGGtt                                                                           >  1:379889/1‑143 (MQ=255)                                                          ggATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAAAGCCCGtcgca                                                                           >  2:749259/1‑139 (MQ=255)                                                                tgTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCAcc                                                                     <  2:28445/143‑1 (MQ=255)                                                                 gTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGGTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGGGGTTTCGCTGTCAATGCCCGGGCTTCCCACCg                                                                    >  2:300352/1‑143 (MQ=255)                                                                    gcggCCGTATGAGGGATCGTACAGTGAGCCCCGGCGAGCGTTCGCCGCGTTCAGCGCGCGTAGCGGGCGGTCGTTGCCGGGAGCACCAGCTGCGGCGCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGt                                                                   <  2:801058/140‑1 (MQ=255)                                                                     cTGCCGTATAACGCATCGTACGGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCTACCGTTAc                                                                <  2:607229/143‑1 (MQ=255)                                                                      tGCCGCATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATGGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTCATTGTGCTGTCAATGCCCGTGGTTTCCACCGTCAcg                                                               <  2:66293/143‑1 (MQ=255)                                                                         cGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGGCAATGCCCGTGGTTGCGACCGTCACgcgc                                                            >  1:251124/1‑143 (MQ=255)                                                                             taACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCCGGCTGGTGATTTCGCTGTCAATGCCCGTGGGGTCCACCGTGACGCGCTCCg                                                        >  2:69021/1‑143 (MQ=255)                                                                               aCGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGATGTAAATGTCCGTGGTTGCCACCGGCCGGCGCTCCGGt                                                      >  2:707648/1‑143 (MQ=255)                                                                                  cATCGTACAGTGGGCCCGCGCGAGCGTTCGCCGCGGTCA‑‑GCGCGTAGCGGGCGTTCAGTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGc                                                   <  1:674315/143‑1 (MQ=255)                                                                                   aTCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCg                                                  <  1:348805/143‑1 (MQ=255)                                                                                     cGTACAGTGGGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGc                                                <  1:220460/143‑1 (MQ=255)                                                                                      gTATAGTGAGCCACAGCGCGCGTTCTCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCa                                               <  1:672286/143‑1 (MQ=255)                                                                                            tGAGCCCCAGCGAGCATTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCCGGt                                         >  2:325250/1‑143 (MQ=255)                                                                                                ccccAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTCGTCTCCACCGTCACGCGCTCCGGCTGCCGCCCCAGGTAGcc                                     >  1:745878/1‑143 (MQ=255)                                                                                                  ccAGCTAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCa                                   <  1:69463/143‑1 (MQ=255)                                                                                                  ccAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCCCCGGTTGCGGCACCACGTCGCCCa                                   >  1:391743/1‑143 (MQ=255)                                                                                                           gtccgccgcGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGCGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCa                          <  2:504393/140‑1 (MQ=255)                                                                                                           gTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCGGCGGCCCCGCCAGGCTGGTGAGTGCGCTGTCAATGCCCGTGGTGTCCACCATCACGCGCTCCGGTAGCGCCACAAGGTAGACCGGTTCAAGCa                          >  2:6009/1‑143 (MQ=255)                                                                                                            ttCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGAATTGGCTGTCAATGCCCGTGGTTTACACCGGCACGCGCGCGGGTTGCGCCACGAGGTAGGCCAGTTCACGcgg                         >  1:314884/1‑141 (MQ=255)                                                                                                                ccgcGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCACCGGTTGAGGCACCAGGTAGCCCAGTTCACGCAGGaaa                     >  2:303765/1‑143 (MQ=255)                                                                                                                              cgTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAGAGATTTGTAGGcc         >  1:155845/1‑143 (MQ=255)                                                                                                                                     gtcGTTCCTTGCCGGAGCCACCGGCGGCGGCCCCGCCTGGCTGGTGGTGTCGCTGGCAATGCCCGGGGTTTCCACCGTCACGCGCTCCGGTGGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTAt  <  2:391859/141‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                   CGATAACCTGCTCACCGCGTTGCGGATCGTAGCCGCTGACCATCGCCCCTTCCTGCGGGATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTAT  >  NC_000913/3123304‑3123576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.