New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3123446 =	39 (0.850)	3 (0.070)	3/260	NT	7.7%	coding (360/2172 nt)	glcB	malate synthase G
	?	NC_000913	3123486 =	34 (0.750)					coding (320/2172 nt)	glcB	malate synthase G

ATCGCCCCTTCCTGCGGGATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAA  >  NC_000913/3123345‑3123627                                                                                                                                                |                                                                                                                                              aTCGCCCCTTCCTGCGGGATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCt                                                                                                                                              <  1:197038/143‑1 (MQ=255)   cGCCCCTTCCTGCGGGATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGt                                                                                                                                            <  1:801467/143‑1 (MQ=255)            gataaagcggcctataaatctttcctgcgtgaactgggctacctggtgccgcaaccggagcgcgtgacggtggaaaccacgggcattgacagCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCt                                                                                                                                              >  2:589106‑M1/93‑134 (MQ=255)            gataaagcggcctataaatctttcctgcgtgaactgggctacctggtgccgcaaccggagcgcgtgacggtggaaaccacgggcattgacagCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCt                                                                                                                                              <  1:589106‑M1/42‑1 (MQ=255)            cTGCGGGATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCg                                                                                                                                   >  2:379649/1‑143 (MQ=255)             tGCGGGCTGCGGTGGGTGCCGTATAACGCGTCGTACAGGGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTTCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGt                                                                                                                                  <  2:281922/143‑1 (MQ=255)             tGCGGGATGCTGTCGCTGCCGTCTAACGCATCGTACAGTGAGCCCCCGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGt                                                                                                                                  <  2:865164/143‑1 (MQ=255)             ataaagcggcctagaaatctttcctgcgtgcactggtctacccggtgccacaaccggagcgcgtgacggtggaacccacgggcattgacagCGAAATCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGccc                                                                                                                                    >  2:358882‑M1/92‑143 (MQ=255)                 ggATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCTCGTGGtt                                                                                                                              >  1:379889/1‑143 (MQ=255)                 ggATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAAAGCCCGtcgca                                                                                                                              >  2:749259/1‑139 (MQ=255)                       tgTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCAcc                                                                                                                        <  2:28445/143‑1 (MQ=255)                        gTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGGTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGGGGTTTCGCTGTCAATGCCCGGGCTTCCCACCg                                                                                                                       >  2:300352/1‑143 (MQ=255)                           gcggCCGTATGAGGGATCGTACAGTGAGCCCCGGCGAGCGTTCGCCGCGTTCAGCGCGCGTAGCGGGCGGTCGTTGCCGGGAGCACCAGCTGCGGCGCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGt                                                                                                                      <  2:801058/140‑1 (MQ=255)                            cTGCCGTATAACGCATCGTACGGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCTACCGTTAc                                                                                                                   <  2:607229/143‑1 (MQ=255)                             tGCCGCATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATGGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTCATTGTGCTGTCAATGCCCGTGGTTTCCACCGTCAcg                                                                                                                  <  2:66293/143‑1 (MQ=255)                                cGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGGCAATGCCCGTGGTTGCGACCGTCACgcgc                                                                                                               >  1:251124/1‑143 (MQ=255)                                    taACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCCGGCTGGTGATTTCGCTGTCAATGCCCGTGGGGTCCACCGTGACGCGCTCCg                                                                                                           >  2:69021/1‑143 (MQ=255)                                      aCGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGATGTAAATGTCCGTGGTTGCCACCGGCCGGCGCTCCGGt                                                                                                         >  2:707648/1‑143 (MQ=255)                                         cATCGTACAGTGGGCCCGCGCGAGCGTTCGCCGCGGTCA‑‑GCGCGTAGCGGGCGTTCAGTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGc                                                                                                      <  1:674315/143‑1 (MQ=255)                                          aTCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCg                                                                                                     <  1:348805/143‑1 (MQ=255)                                            cGTACAGTGGGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGc                                                                                                   <  1:220460/143‑1 (MQ=255)                                             gTATAGTGAGCCACAGCGCGCGTTCTCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCa                                                                                                  <  1:672286/143‑1 (MQ=255)                                                   tGAGCCCCAGCGAGCATTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCCGGt                                                                                            >  2:325250/1‑143 (MQ=255)                                                       ccccAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTCGTCTCCACCGTCACGCGCTCCGGCTGCCGCCCCAGGTAGcc                                                                                        >  1:745878/1‑143 (MQ=255)                                                         ccAGCTAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCa                                                                                      <  1:69463/143‑1 (MQ=255)                                                         ccAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCCCCGGTTGCGGCACCACGTCGCCCa                                                                                      >  1:391743/1‑143 (MQ=255)                                                                  gtccgccgcGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGCGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCa                                                                             <  2:504393/140‑1 (MQ=255)                                                                  gTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCGGCGGCCCCGCCAGGCTGGTGAGTGCGCTGTCAATGCCCGTGGTGTCCACCATCACGCGCTCCGGTAGCGCCACAAGGTAGACCGGTTCAAGCa                                                                             >  2:6009/1‑143 (MQ=255)                                                                   ttCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGAATTGGCTGTCAATGCCCGTGGTTTACACCGGCACGCGCGCGGGTTGCGCCACGAGGTAGGCCAGTTCACGcgg                                                                            >  1:314884/1‑141 (MQ=255)                                                                       ccgcGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCACCGGTTGAGGCACCAGGTAGCCCAGTTCACGCAGGaaa                                                                        >  2:303765/1‑143 (MQ=255)                                                                                     cgTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAGAGATTTGTAGGcc                                                            >  1:155845/1‑143 (MQ=255)                                                                                            gtcGTTCCTTGCCGGAGCCACCGGCGGCGGCCCCGCCTGGCTGGTGGTGTCGCTGGCAATGCCCGGGGTTTCCACCGTCACGCGCTCCGGTGGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTAt                                                     <  2:391859/141‑1 (MQ=255)                                                                                            gggcattgacagcgaaatcaccagccaggcggggccgcagctggtgatttcgCTGTCAATGCCCGTGGGTTCCACCGTCACGCGCTCCGGTTGTGGCACCGGGTAGACCAGTGCACGCAGGAAAGATTTCTAGGCCGCTTTAt                                                     >  2:358882‑M2/53‑143 (MQ=255)                                                                                                      agcgaaatcaccagccaggcggggccgcagctggtggttccgCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATc                                                    >  2:589106‑M2/43‑134 (MQ=255)                                                                                                      agcgaaatcaccagccaggcggggccgcagctggtggttccgCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATc                                                    <  1:589106‑M2/92‑1 (MQ=255)                                                                                                          gAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGGTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTGATGGGCCGCTTCATCCTTTACCCGcccc                                       >  2:318438/1‑143 (MQ=255)                                                                                                                  ggCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCTCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATtgct                               <  2:745878/142‑1 (MQ=255)                                                                                                                         gCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCGTTTACCGGCCCCGGATTGCTGCGAttc                        >  1:459229/1‑141 (MQ=255)                                                                                                                         gCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGGCACGCGCTCCGGTGGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATCTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGacac                        >  1:914093/1‑140 (MQ=255)                                                                                                                          ccccGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGcc                       >  1:265070/1‑143 (MQ=255)                                                                                                                            ccGCCTGGCTGGTGATTTCGCTGTCACGGCCCGTGGTTTCCACCGTCACGCGCGCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCAc                     <  1:20598/143‑1 (MQ=255)                                                                                                                                    ctggTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCTACtcatcacg             >  1:66850/1‑141 (MQ=255)                                                                                                                                          aTTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATCTATAGGCCGCTCTAGCTTTTACCGCCCCCGGATTCCCGCGATGCCACTCCCCAAccgcctc       >  1:416686/1‑140 (MQ=255)                                                                                                                                               gCTGTCACTGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGaa  <  1:132353‑M2/142‑1 (MQ=255)                                                                                                                                                |                                                                                                                                              ATCGCCCCTTCCTGCGGGATGATGTCGCTGCCGTATAACGCATCGTACAGTGAGCCCCAGCGAGCGTTCGCCGCGTTCA‑‑GCGCGTAGCGGGCGTTCATTGCCGGAACCACCAGCTGCGGCCCCGCCTGGCTGGTGATTTCGCTGTCAATGCCCGTGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAA  >  NC_000913/3123345‑3123627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.