| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4035622 | 10 (0.220) | 6 (0.140) | 4/250 | NT | 55.9% | noncoding (92/1542 nt) | rrsA | 16S ribosomal RNA |
| ? | NC_000913 | = 4166734 | 0 (0.000) | noncoding (76/1542 nt) | rrsB | 16S ribosomal RNA | |||||
TTCTTTGAGCGTCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCC > NC_000913/4035510‑4035764 | ttttttgagTGTCAAAGTGTTAGATTGAAGTGTTGGATCATGGTTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCCAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTcctgttaccgttcgacttgcatgtgttagg < 2:81216‑M1/140‑31 (MQ=255) ccTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgagccatgatcaaactcttcaatttaaaagtttgacgctcaaagaa > 1:261222‑M1/1‑46 (MQ=255) ggTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGGTGAGTAAGGTCTGGGAAACTGACTGCTGGGGGGGGAGAACGGACGGAAACGGTAGCTAATACCGCCTAACGGCGCAAGACCGAAGAggggggcgttc > 2:739571/1‑136 (MQ=1) gTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCg > 1:488122/1‑143 (MQ=32) tAACAGGAATACGCTGGCTGCGTTGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCGGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCgg < 1:840211/143‑1 (MQ=11) gaaCAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGTCGGACGGGTCAGTAATGTCTGGGAAACTGCCTGATCGAGGGGCATAACTACTGCAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCgg < 2:416322/142‑1 (MQ=11) caaCAGGAAGAAGCTCGCCTCTGTGCTGACGAGTGGCGGACGGGCGAGTAATGGCTGGGAAACTGCCGGATGGAGGGGGATAACTACTTGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCCAAGAGGGGTACCTTCgg < 1:473938/142‑1 (MQ=11) aGGAAGAAGCTTGCTTCTTcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgagccatgatcaaactcttcactttacccgtttgacgctcaaagcattacacttcgtaatgaattacatgttc > 1:262618‑M1/1‑19 (MQ=255) aGGAAGAAGCTTGCTTCTTcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgagccatgatcaaactcttcaatttaaaagtttgacgctcaaagaattaaacttcgtaatgaattacgtgttc > 1:577464‑M1/1‑19 (MQ=255) aGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGATAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGcca > 2:790794/1‑142 (MQ=17) ggAAGTAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCctc < 1:609471/143‑1 (MQ=17) gaagaaGCTTGCTTCTTcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatctgagccatgatcaaactcttcaatttaaaagtttgacgctcaaagaattaaacttcgtagtgaattacgtgttcac > 1:157885‑M1/1‑17 (MQ=255) gaagaaGCTTGCTTCTTcctgttaccgttcgacttgcatgtgttaggactgccgccggcgttcaatctgagccatgatcaaactcttcaatttaaaagtttgacgctcaaagaattaaacttcgtaatgaattacgtgttcac > 2:649544‑M1/1‑17 (MQ=255) aagaagCTTGCTTCTTTGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCtt < 1:444828/143‑1 (MQ=32) aagCTTGCTTCTTTGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCACGACCAAAGAGGGGTACCTTCGGGCCTCTTGcc > 1:443036/1‑143 (MQ=17) ttgcttCTTTGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCAGAACGTCGCAAGAACAAAGAGGGGTACCTTCGGGCCTCATCCCATCg > 2:48733/1‑143 (MQ=255) ttcttcctgttaccgttcgacttgcatgtgttaggcctgccgccagcgttcaatcggagccatgatcaaactcttgaatttaaaagtgtgacgctcaaagaattaaacttcgtaatgaattacgtgttcactcttgagacttg < 2:35053‑M1/143‑139 (MQ=255) ttcttTGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAACGAGGGGTGCCTTCGGGCCTCTTGCCATCGGAtg > 1:529417/1‑143 (MQ=17) tttttGCTGCGGAGGGGCGGCCGGGTGAGTAATGTCTGGGCAACTGCCTGATGGAGGGGGATAACTACTGGAAACCGTAGCTAATACCGCATAACTTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGAtgt < 2:808578/141‑1 (MQ=11) cgtcctgtttccggtcgccttgcatgtgttaggcctgccgccagcgttcaatctgagccatgatcaaactcttcaatttaatagtttgacgcttaaagaattaaacttcgtaatgaattacgtgttcactcttgagacttggt < 2:478850‑M1/141‑141 (MQ=255) tttGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCGATCGGATGGGc > 2:129493/1‑143 (MQ=17) ttcctgttaccgttcgacttgcatgtgtgaggcctgccgccagcgttcaatctgagccatgatcaaactcttcaatttaaaagtttgacgctcaaagaattagactgcgtaatgaattacgagttcaatgtcgagacgtggta > 2:434134‑M1/1‑2 (MQ=255) tcctcttagcgttcgatttgcatttgttaggcctgtcgccagcgttcacgctgagctatgatcaaactcttcaatttaaaagtttgactctcaaagaattaaacttcgtaatgaattacgtgttcactcttgagacttggtat < 2:287842‑M1/143‑143 (MQ=255) | TTCTTTGAGCGTCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCC > NC_000913/4035510‑4035764 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |