New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4035622	10 (0.220)	6 (0.140)	4/250	NT	55.9%	noncoding (92/1542 nt)	rrsA	16S ribosomal RNA
	?	NC_000913	= 4166734	0 (0.000)					noncoding (76/1542 nt)	rrsB	16S ribosomal RNA

ATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCGTCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCA  >  NC_000913/4166593‑4166847                                                                                                                                              |                                                                                                                  aTACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGAGTCAAACTTTTAAATTGAAGAGTTTGATCATAGCTCAGCGTGAACGCTGGCGACAGGCCTAACAAATGCAAATCGAACGCTAAGAGGa                                                                                                                  <  2:287842‑M2/143‑2 (MQ=255)  tACCACGTCTCGACATTGAACTCGTAATTCATTACGCAGTCTAATTCTTTGAGCGTCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTCACACATGCAAGTCGAACGGTAACAGGaa                                                                                                                 >  2:434134‑M2/1‑141 (MQ=255)   aCCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTAAGCGTCAAACTATTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGGCGACCGGAAACAGGacg                                                                                                                <  2:478850‑M2/143‑4 (MQ=255)     cAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCGTCACACTTTTAAATTCAAGAGTTTGATCATGGCTCCGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGaagaa                                                                                                              <  2:35053‑M2/143‑6 (MQ=255)                 gTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCGTCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCCGGCGGCAGTCCTAACACATGCAAGTCGAACGGTAACAGGaagaagcaagcttcttc                                                                                                  >  2:649544‑M2/1‑126 (MQ=255)                 gTGAACACGTAATTCACTACGAAGTTTAATTCTTTGAGCGTCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGaagaagcaagcttcttc                                                                                                  >  1:157885‑M2/1‑126 (MQ=255)                   gAACATGTAATTCATTACGAAGTGTAATGCTTTGAGCGTCAAACGGGTAAAGTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGaagaagcaagcttcttcct                                                                                                >  1:262618‑M2/1‑124 (MQ=255)                   gAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCGTCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGaagaagcaagcttcttcct                                                                                                >  1:577464‑M2/1‑124 (MQ=255)                                              ttCTTTGAGCGTCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGaagaagcaagcttcttcctgttaccgttcgacttgcatgtgttagg                                                                     >  1:261222‑M2/1‑97 (MQ=255)                                                                                                                 ccTAACACATGCAAGTCGAACGGTAACAGGaagaagcaagcttcttcctgttaccgttcgactggcatgtgttaggcctgccgccagcgttcaatctgaaccatgatccaacacttcaatctaacactttgacactcaaaaaa  <  2:81216‑M2/143‑114 (MQ=255)                                                                                                                                              |                                                                                                                  ATACCAAGTCTCAAGAGTGAACACGTAATTCATTACGAAGTTTAATTCTTTGAGCGTCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCA  >  NC_000913/4166593‑4166847

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.