New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2035286 =	46 (1.000)	3 (0.070)	3/240	NT	7.0%	intergenic (+43/‑549)	yedS/hchA	putative outer membrane protein YedS, N‑terminal fragment/protein/nucleic acid deglycase 1
	?	NC_000913	2035318 =	38 (0.910)					intergenic (+75/‑517)	yedS/hchA	putative outer membrane protein YedS, N‑terminal fragment/protein/nucleic acid deglycase 1

TTCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTACTCTTCAAGCTAACACCCAAATGCATTTCTTTATGAAT  >  NC_000913/2035178‑2035459                                                                                                                                             |                                                                                                                                              ttCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCtttt                                                                                                                                             <  2:702674/143‑1 (MQ=255)  tCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCttttt                                                                                                                                            <  2:251260/143‑1 (MQ=255)      tgaaaaaaaCGGCATGGCTACAGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCCAATCAGTCAACTCGCTGCGGCGTGTTACTGTACAACTGAACACTCGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTAtt                                                                                                                                        <  1:745041/137‑1 (MQ=255)       gctggttgatggtattgtgccaggaggggcagggtaaggtgctgtatcgatatgcttcggcaattgcgtgtgccgcagatggagatgaaatgccaataaaaaAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTg                                                                                                                                       >  1:627878‑M1/103‑143 (MQ=255)       gAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCACCAAACTCTGGATTGTTTATTg                                                                                                                                       >  1:427143/1‑143 (MQ=255)         aGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGc                                                                                                                                     <  2:9904/143‑1 (MQ=255)                   aTCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCAtctc                                                                                                                           >  1:636064/1‑143 (MQ=255)                           cGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCg                                                                                                                   <  1:842091/143‑1 (MQ=255)                           cGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCACTGCGCGGGGGTAGTTTAAAACTGAACGCGAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCg                                                                                                                   <  1:908013/143‑1 (MQ=255)                           cGATGATATAGTTGCTGTTGGATTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCg                                                                                                                   <  1:308152/143‑1 (MQ=255)                             ggaggggtagggtatggtgttgtatcaatatgcttcggaaattgcgtgtgcggcagagggagaggaaatgccaataaaaaAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGc                                                                                                                 >  1:62657‑M1/81‑143 (MQ=255)                             atgatATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGc                                                                                                                 <  2:372008/143‑1 (MQ=255)                                atatCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAAGTAAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTTCGGcacc                                                                                                              >  1:572467/1‑142 (MQ=255)                                   tgcttGCTCTGGGCTGAGTCTACCAGTTCTAGTCAGTAAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGc                                                                                                           <  2:140281/140‑1 (MQ=255)                                     cgtGCTGTGTGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCaa                                                                                                         <  2:205087/141‑1 (MQ=255)                                       tGCTGTGGGCTTAGTCAACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAAtt                                                                                                       <  1:182630/143‑1 (MQ=255)                                          tgtgGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCCGCACACGCAAGTGcc                                                                                                    >  1:662650/1‑143 (MQ=255)                                            tgGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCCTCTGCGGCCCACGCAATTGCCGa                                                                                                  >  1:258866/1‑143 (MQ=255)                                             gggCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGGTCGTCCCTCATCGAACTCAGGCTTTGTTATTGGCATTTCATCTAGATCTGCGACACACGCAATTGCAGac                                                                                                 >  2:700719/1‑142 (MQ=255)                                             gggCGTAGTTTACCAGTTCTAATCAGTCAACTCGGTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGaa                                                                                                 <  2:266797/143‑1 (MQ=255)                                                       tACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCAGCTGCGGCACACGCAATTGCCGCAGCATATCGAt                                                                                       >  1:5243/1‑143 (MQ=255)                                                       gaCCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGAt                                                                                       <  1:786149/142‑1 (MQ=255)                                                        atcggctCTAATCAGGCAACTCGCTGCGGGTTGTTACTGTAGAACTGAACACTAGCCTGAGCTCGTCACTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATa                                                                                      <  2:847066/137‑1 (MQ=255)                                                        aCCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATa                                                                                      <  1:892666/143‑1 (MQ=255)                                                           aGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCCTCTGCGGCACCCGCAAGTGGCCAAGCATATCGATACAg                                                                                   >  2:142775/1‑143 (MQ=255)                                                             ttCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGcc                                                                                 >  2:206382/1‑142 (MQ=255)                                                             ctctacgcAGTCAACGCGCTGCAGCGGTTTCCGTTAAGACTGACCCCTAGCGTGAGTTCGCGCCTCGTCGAACTCGGGCTTTTTTATTTGCATTTCGGCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCa                                                                                 <  2:182224/136‑1 (MQ=255)                                                               gtAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCAGCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCAGCACACGCAATTGCCGAAGCATAACGATACAGCAcc                                                                               >  2:263413/2‑143 (MQ=255)                                                                tAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCt                                                                              >  1:500682/1‑143 (MQ=255)                                                                 aaTCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGGTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGCCACACGCAATCGCCGACGCATAACGATACCACAccct                                                                             >  2:510989/1‑141 (MQ=255)                                                                          aCTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGccc                                                                    <  1:816540/143‑1 (MQ=255)                                                                              gccgcagatggagatgaaatgccaataaaaaagcctgagttcgatgagggacgaactcaggctTTTTTATTGGCATTTCCTCTCCCTCTGCCGCACACGCAATTTCCGAAGCATATTGATACAACACCATACCCTACCcctcc                                                                >  1:62657‑M2/64‑143 (MQ=255)                                                                                       tgtTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTTTTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAAt                                                       <  1:595566/143‑1 (MQ=255)                                                                                        gttatcttAAAACCGAACACTAGCCTGAGGTCGTCCCTCTTCGAACTCAGGGTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATa                                                      <  2:74704/136‑1 (MQ=255)                                                                                          tACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAAc                                                    >  2:487056/1‑143 (MQ=255)                                                                                             tGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATc                                                 >  2:195478/1‑143 (MQ=255)                                                                                               tAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTTCATCTGCGCCACACGCAATTGCCGCAACAAACAAATTAATAACTTTAGCCTCCCCCCCCCGACACAATAACACCac                                               >  2:885529/1‑142 (MQ=255)                                                                                                aaaaCTGAACACTAGGGTGAGTGCGTCCCTCAGCGAAATAAGGCGTTTTTATTGGCATTTACGCTCAATCTGCGGCAGACGCAATCGCCGAAGCATATCGATACAGCACCTTACTCTGCCCCTCCCGGCACAATAACATAAAc                                              <  2:575853/143‑1 (MQ=255)                                                                                                aaaaCTCAACACTAGCCCGAGTTCGTCCCTTCTCGAACTCAGGTTCTTTTATTTGCATTTCATCTCCATCGGCCGCACACGCAATTGCCGAAGCCTATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAAc                                              <  2:738220/143‑1 (MQ=255)                                                                                                 aaaCTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCGCAGTAACATCAAcc                                             >  1:59070/1‑143 (MQ=255)                                                                                                  aaCTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACCCAATTGCCGAAGCATATCGCTACAGATCCTTACCCCGCACATCCTACCAAAACAATATCAACCa                                            >  2:74319/1‑143 (MQ=255)                                                                                                    caataaaaaagcctgagttcgatgagggacgaactcaggctTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATACCATCAACCAGc                                          >  1:627878‑M2/42‑143 (MQ=255)                                                                                                    cTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCAGATTGGCCCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGc                                          <  1:206382/143‑1 (MQ=255)                                                                                                     tGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCCACCAGCt                                         >  1:730741/1‑143 (MQ=255)                                                                                                             AGCCTGAGTTCGTCCCACATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTACTCTTCa                                 >  1:305222‑M1/1‑143 (MQ=255)                                                                                                               CCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTACTCTTCAAg                               <  1:518163‑M1/143‑1 (MQ=255)                                                                                                                ctgagttcgatgagggacgaactcaggctTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCCAAGCATATAGATACAGCACCTTACCCTGCCCCTCCTGGCACACTAACATCAACCAGCTACTCTTCAAGc                              >  2:688522‑M2/30‑143 (MQ=255)                                                                                                                CTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTACTCTTCAAGc                              >  1:795418‑M1/1‑143 (MQ=255)                                                                                                                 TGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATACCATCAACCAGCTACTCTTCAAGCt                             <  2:377988‑M1/143‑1 (MQ=255)                                                                                                                 TGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTCCTCTTCACGCt                             <  1:763841‑M1/143‑1 (MQ=255)                                                                                                                     TTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTACTCTTCAAGCTAaca                         >  1:487056‑M1/1‑143 (MQ=255)                                                                                                                        GTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTACTCTTCAAGCTAACAccc                      >  2:170398‑M1/1‑143 (MQ=255)                                                                                                                            cTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTACTCTTCAAGCTAACACCCAAAt                  <  1:827301/143‑1 (MQ=255)                                                                                                                                 cgaactcaggctTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATAGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCCGCTACTCTTCATGCTATCCCCCAAATGCAtt             >  1:169715‑M2/13‑143 (MQ=255)                                                                                                                                      tcaggctTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTACTCTTCAAGCTAACACCCAAATGCATTTCttt        <  1:465879‑M2/136‑1 (MQ=255)                                                                                                                                       caggctTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTACTCTTCAAGCTAACACCCAAATGCATTTCTTTa       <  1:195478‑M2/137‑1 (MQ=255)                                                                                                                                       caggctTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTACTCTTCAAGCTAACACCCAAATGCATTTCTTTa       <  1:875627‑M2/137‑1 (MQ=255)                                                                                                                                        aggctTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTACTCTTCAAGCTAACACCCAAATGCATTTCTTTAt      <  1:28086‑M2/138‑1 (MQ=255)                                                                                                                                           ctTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTACTCTTCAAGCTAACACCCAAATCCATTTCTTTATGaa   >  2:418109‑M2/3‑143 (MQ=255)                                                                                                                                            tTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCACCTGGCACACTAACATCAACCCGCTACTCTTCAAGCTAACATCCACATGCATTTCTTTCtgact  >  2:15859‑M2/2‑141 (MQ=255)                                                                                                                                             |                                                                                                                                              TTCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTACTCTTCAAGCTAACACCCAAATGCATTTCTTTATGAAT  >  NC_000913/2035178‑2035459

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.