New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2726026 =	51 (1.110)	4 (0.090)	4/264	NT	7.3%	intergenic (‑280/+43)	kgtP/rrfG	alpha‑ketoglutarate:H(+) symporter/5S ribosomal RNA
	?	NC_000913	3423662 =	NA (NA)					intergenic (‑7/+6)	thrV/rrfD	tRNA‑Thr/5S ribosomal RNA

CACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAG  >  NC_000913/3423520‑3423803                                                                                                                                               |                                                                                                                                              caccGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCCGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTaa                                                                                                                                               >  1:434444/1‑143 (MQ=255)              ccgccAGACAAATTCTTTTCTAAGCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTgg                                                                                                                                  <  2:37995/143‑1 (MQ=255)               cgccAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCACATCCGCCATATCGGCACGCTCAATTTGATGCCTGGc                                                                                                                                 >  1:164169/1‑143 (MQ=38)               cgccAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCGCTACCAACTGAGCCATATCAGCGCGCGAAATTTGATGCCTgga                                                                                                                                 >  1:384035/1‑142 (MQ=255)                gccAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCa                                                                                                                                <  1:83928/143‑1 (MQ=255)                     aCAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTCAATTTGATGCCTGGCAGTTcc                                                                                                                           >  2:813683/1‑143 (MQ=255)                      cAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCAGGCAGCTccc                                                                                                                          >  2:291643/1‑143 (MQ=255)                        aaTTCTTTCCTAATCTGCCGAACTTTAGCCTAAGCAGTGGTGCTGATACCCAGCGTCGAACTGGGGACCTCACCCTTACCCAGTGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTa                                                                                                                        <  2:31283/143‑1 (MQ=37)                              tttCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCCGAGGCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAACTTTGCTGCCTGGCAGTTCCCTACtctct                                                                                                                  >  2:798412/1‑142 (MQ=255)                               ttCTAATCTGCCGAACTTTAACCTACAAAGTGGTGCCGCTACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGc                                                                                                                 <  1:708756/143‑1 (MQ=255)                                    aTCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCGGTTCCCTACTCTCGCATggg                                                                                                            >  1:232112/1‑143 (MQ=255)                                     tccgCCGAACTTTAACCGAAAAAGTGGTGCTGAGCCCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATgggg                                                                                                           <  1:731868/140‑1 (MQ=255)                                      cTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGga                                                                                                          <  1:424846/143‑1 (MQ=255)                                          cGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGCAGAcc                                                                                                      >  2:282000/1‑143 (MQ=255)                                               tttAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCcaca                                                                                                 >  2:39278/1‑143 (MQ=255)                                               tttAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCCCTACCAACTGAGCCATATCAGCACGCTAAATTTGCTCGCTAGCAGTTCCCTACCCTCGCCTGCGGAGACCCccca                                                                                                 >  2:512380/1‑143 (MQ=25)                                                     ctatgatgtggtgCTGATTGCCAGAGTCGAGCTGGGGACCTCACGTTTACCAAGGGTGCGCTCTACCAACGGAGCCATATCAGCACGCTAAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCa                                                                                           <  2:698635/136‑1 (MQ=25)                                                      tAAAAAGTGGTGCTGATACCCAGAGTCGAACGGGGGACCTCACCCTTACCCAGGGTGCGCTCGACCAGCTGAGCCATATCAGCACGCTAGATTTGATGCCTGCCAGTGCCCTACTCTCGCATGGGGAAACCCCACACTACGAt                                                                                          >  1:289906/1‑143 (MQ=37)                                                       aaaaaGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCCGTACAGTACTCTCGCACGGGGAGACCCCCCCCTACCATc                                                                                         >  2:884203/1‑143 (MQ=25)                                                            gtggtgCTCATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATAGCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGgcgc                                                                                    <  1:32543/143‑1 (MQ=255)                                                             tggtgCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCCGCACGCTAAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCt                                                                                   >  2:317542/1‑143 (MQ=255)                                                                         ccAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTAAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTCCTCTCGCATGGGGAGACCCCACACCCCCACCGGCGCTACGGCgcacgac                                                                       >  2:482005/1‑137 (MQ=37)                                                                               tCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACGCCACACTACCATCGGCGCTACGGCGTGTCACGTCTGa                                                                 >  2:197509/1‑143 (MQ=255)                                                                                  aaCTGGGGACCTCACCCTTACCAAGGGTGCGCACTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCCCACTACCCTCGGCGCTACGGCGCTTCACTCCTGAGtt                                                              >  2:477453/1‑143 (MQ=25)                                                                                   aCTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCCTCGGCGCTACGGCGCATCACTTCTGACTTc                                                             >  2:245810/1‑143 (MQ=255)                                                                                     tGGGGACCTCACCCTTACCACGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACCCCCATCCACGCTACGGCCTGTCGCCTCTGAGCTCgc                                                           >  2:756178/1‑142 (MQ=21)                                                                                     tGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTCACTTTGATGCCTGGCAGTTCCCTACTCTCGCATGGAGAGACCCCACACTAACATCGGCGCTACGGCGTTTCACTTCTCAGTTCgg                                                           >  2:673277/1‑143 (MQ=21)                                                                                       gggACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCa                                                         >  1:653691/1‑143 (MQ=255)                                                                                         gACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCAGCGGCGCTACGGCGTTTGGCTTCTGAGTTCGGGATg                                                       >  1:346765/1‑143 (MQ=255)                                                                                            cTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGCCCCCACACTACCATCGGCGCTGCGGCGTTTCACTTCTGTGTTCTGCATgggg                                                    >  1:632443/1‑143 (MQ=255)                                                                                                      ccAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGa                                          >  1:712788/1‑143 (MQ=255)                                                                                                             tGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTATCGCATTTTTAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACggc                                   >  1:573383/1‑143 (MQ=18)                                                                                                                gcTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCt                                >  2:722210/1‑143 (MQ=255)                                                                                                                 ctctACCAACTGAGCCATATCCGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTa                               >  1:291241/1‑143 (MQ=255)                                                                                                                         aCTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCCACGGCGTTTCCCTTCCGAGTCCGGCCTGGGGACGGCCGGGCCCACCGCGCTCCGgccgcc                       >  2:868105/1‑143 (MQ=14)                                                                                                                          cTGAGCCATATCAGCACGCTAAATTTGATGCTTGGCATATTCCTTCTCTCGCATGGGGAGACCCCACAGTACCTTCGTCGCTACGCCGTTTCACTTCTGAGTCCCGCAGGGCGGCAGGTGGGACCGCCGCGCTCCGgcccgca                      >  2:321811/1‑139 (MQ=14)                                                                                                                             aGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGCTCAGGTGGGACCACCGCCCTCCGGCCGCCAgcc                   >  1:513425/1‑141 (MQ=255)                                                                                                                                cATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCCGGCcaa                >  2:627449/1‑143 (MQ=255)                                                                                                                                      aGCACGCTAAATTCGCTGCCTGGCAGTTCCCGACTCTCGCATGGGGAGCCCCCACACTACCAGCGGCGCTCCGGCGCTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGt          <  2:289906/143‑1 (MQ=11)                                                                                                                                           gCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCCGGTTCTGGTTTAt     >  2:847443/1‑143 (MQ=255)                                                                                                                                           gCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTAt     <  1:291643/143‑1 (MQ=32)                                                                                                                                             tAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTCCGGCGTTTCACTTCTGAGTTCGGCCTGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCa   >  1:494/1‑143 (MQ=14)                                                                                                                                             tAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCACATTCCGtcttggcc   >  1:808200/1‑139 (MQ=255)                                                                                                                                              aaaTTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCAGGCAGGCAAATTCCGTTTTATCAg  >  1:503866/1‑143 (MQ=2)                                                                                                                                               |                                                                                                                                              CACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAG  >  NC_000913/3423520‑3423803

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.