New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4559341 =	51 (1.110)	4 (0.090)	3/248	NT	7.9%	coding (186/1173 nt)	iadA	isoaspartyl dipeptidase
	?	NC_000913	4559360 =	46 (1.070)					coding (167/1173 nt)	iadA	isoaspartyl dipeptidase

CAACCACTGACGTGACGCCCGCTTCCGTCAGGCGACTTAGCGCCACTTCCGGCGTGCGCGTCGTGGGACCTGCTTCGCCGCCACCGCCAATCAAATGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCAACGGCGATAATTTTGCCGTTAGCGACGAGGACATCGCAAATTCCCCGATCTTCCGGCGCATACAAATGCGCTCCCTGCAGCAGG  >  NC_000913/4559223‑4559497                                                                                                                                          |                                                                                                                                          caaccaCTGACGTGACGCCCGCTTCCGTCAGGCGACTTAGCGCCACTTCCGGCGTGCGCGTCGTGGGACCTGCTTCGCCGCCACCGCCAATCAAATGGACGTGTTGATCAATAAAACCTGGGCAGAGGCTCTGCCCACTgagg                                                                                                                                      >  1:233981/1‑142 (MQ=255) caaccaCTGACGTGACGCCCGCTTCCGTCAGGCGACTTAGCGCCACTTCCGGCGTGCGCGTCGTGGGACCTGCTTCGCCGCCACCGCCAATCAAATGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTgaga                                                                                                                                      >  1:435999/1‑143 (MQ=255)    ccaCTGACGTGACGCCCGCTTCCGTCAGGCGACTTAGCGCCACTTCCGGCGTGCGCGTCGTGGGACCTGCTTCGCCGCCACCGCCAATCAAATGGACGTGTCGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCg                                                                                                                                   >  2:490183/1‑143 (MQ=255)        tgacgtgacgCCCGCTTCCGTCAGGCGACTTAGCGCCACTTCCGGCGTGCGCGTCGTGGGACCTGCTTCGCCGCCACCGCCAATCAAATGGAAGTGTTGATCAATAAAACCTGGGCCGAGGATGTGCCCACCGAAATCGACaa                                                                                                                               >  2:89273/1‑143 (MQ=255)             tgcggCCCGCTACCGTCAGGCGACTTAGCGCCACTTCCGGCGTGCGCGTCGCGGGACCTGCTTCGCCGCCACCGCCAATCAAATGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTg                                                                                                                          <  1:431535/139‑1 (MQ=255)             tgacgCCCGCTTCCGTCAGGCGACTTAGCGCCACTTCCGGCGTGCGCGTCGTGGGACCTGCTTCGCCGCCACCGCCAATCAAATGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGAGCGACAACCGTg                                                                                                                          >  2:25184/1‑143 (MQ=255)             tgacgCCCGCTTCCGTCAGGCGACTTAGCGCCACTTCCGGCGTGCGCGTCGTGGGACCTGCTTCGCCGCCACCGCCAATCAAATGGACGTGTTGATCAATAAAACCTGCGCAGAGGATCTGCCCACTGAGATCGACAACCGTg                                                                                                                          >  1:710954/1‑143 (MQ=255)                 gCCCGCTTCCGTCAGGCGACTTAGCGCCACTTCCGGCGTGCGCGTCGTGGGACCTGCTTCGCCGCCACCGCCAATCAAATGGACGTGTTGATCAATAAAACCTGGGCCGAGCATCTGCCCACTGAGATCGACAACCGTGCAgg                                                                                                                      >  2:113850/1‑142 (MQ=255)                       ttCCGTCAGGCGACTTAGCGCCACTTCCGGCGTGCGCGTCGTGGGACCGGCTTCGCCGCCACCGCCAATCAAATGGACGTGCTGATCAATAAAACCTGGGCAGAGGATCCGCCCACTGAAACGGACAACCGTGAAgggccgca                                                                                                                >  2:513999/1‑136 (MQ=255)                           gTCAGGCGACTTAGCGCCACTTCCGGCGTGCGCGTCGTGGGACCTGCTTCGCCGCCACCGCCAATCAAATGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAAt                                                                                                            >  1:185905/1‑143 (MQ=255)                           gTCAGGCGACTTAGCGCCACTTCCGGCGTGCGCGTCGTGGGACCTGCTTCGCCGCCACCGCCAATCAAATGAACGAGTTGAACAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAAt                                                                                                            >  1:20336/1‑143 (MQ=255)                             cAGGCGACTTAGCGCCACTTCCGGCGTGCGCGTCGTGGGACCTGCTGCGCCGCCACCGCCAATCAAATGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGt                                                                                                          <  1:501533/143‑1 (MQ=255)                                 cGACTTAGCGCCACTTCCGGCGTGCGCGTCGTGGGACCTGCTTCGCCGCCACCGCCAATCAAATTGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACACTGTCAGa                                                                                                      >  1:819862/1‑143 (MQ=255)                                        gcgcCACTTCCGGCGTGCGCGTCGTGTGACCTGCTTCGCCGCCACCGCCAATCAAATGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGata                                                                                               <  1:540829/143‑1 (MQ=255)                                        gcgcCACTTCCGGCGTGCGCGTCGTGGGACCTGCTTCGCCGCCACCGCCAATCAAATGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGCTCGGTACACTGTCAGAAGGGata                                                                                               >  2:789485/1‑143 (MQ=255)                                         cgcCACTTCCGGCGTGCGCGTCGTGGGACCTGCTTCGCCGCCACCGCCAATCAAATGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGCAggcacct                                                                                              >  1:702008/1‑138 (MQ=255)                                            cctctCCGGCGTGCGCGTCGTGGGACCTGCTTCGCCGCCACCGCCAATCAAATGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGc                                                                                           <  2:422605/139‑1 (MQ=255)                                             acgtCCGGCGTGCGCGTCGTGCGACCTGCTTCGCCGCCACCGCCAACCAAATGGACGTGTCGATCAATAACACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCt                                                                                          <  1:490195/140‑1 (MQ=255)                                               ttCCGCCGTGCGCGTCGTGGGACCTGCTCCGCCGCCACCGCCAATCAAATGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACACTGTCAGAAGGGATATTGCTgg                                                                                        <  1:682842/143‑1 (MQ=255)                                               gtCCGGCGTGCGCGTCGTGGGACCTGCTTCGCCGCCACCGCCAATCAAATGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTgg                                                                                        <  1:844117/142‑1 (MQ=255)                                                  cGGCGTGCGCGTCGTGGGACCTGCTTCGCCGCCACCGCCAATCAAATGGACGTGTTGATCAATAAAAGCTGGGCAGAGGATCTGCCCACTGAGCTCGACAACCGTGCCGGTCGGTACAAGGTAAGAAGGGAGATCGCTgacca                                                                                     >  2:270553/1‑139 (MQ=255)                                                  cGGCGTGCGCGTCGTCGGACCTGCTTCGCCGCCACCGCCAATCAAATGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCaa                                                                                     <  2:24313/143‑1 (MQ=255)                                                      gTGCGCGTCGTGGGACCTGCTTCGCCGCCACCGCCAATCAAATGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACACTGTCGGAGGGGATATTGCTGGCAACGGc                                                                                 >  1:261790/1‑143 (MQ=255)                                                        gcgcGTCGTGGGACCTGCTTCGCCGCCACCGCCAATCAAATGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCAACGGCGa                                                                               <  1:608682/143‑1 (MQ=255)                                                               gtGGGACCTGCTTCGCCGACACCGCCAATCAAATGGACGTGTTGATCAATAAAACCTGAGCAGAGGATCTGCCCACTGAGATCAACAACCGTGCAGTTCGGTACAATATCAGAAGCGATATCGCTGGCCACGGCGATAAtctt                                                                        >  2:449532/1‑143 (MQ=255)                                                                    gccTGCTTCGCCGTCACCGCCAATCAAATGGACGTTTTGATCAATAAATCCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCAACGGCGATAATTTTGCCGt                                                                   <  2:839256/142‑1 (MQ=255)                                                                    cagcaatatcccttctgacattgtaccgaactgcacggttgtcgatctcagtgggcagatcctctgcccaCTGAGATCGACAACCGTGCAGTTCGGt                                                                                                                 <  2:60957‑M2/27‑1 (MQ=255)                                                                    cagcaatatcccttctgacattgtaccgaactgcacggttgtcgatctcagtgggcagatcctctgcccaCTGAGATCGACAACCGTGCAGTTCGGt                                                                                                                 >  1:60957‑M2/71‑97 (MQ=255)                                                                       tGCTTCGCCGCCACCGCCAATCAAATGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCGGTTCGGTACAAGCTCAGAAGGGCTATGGCTGGCAACGGCGCTACTCTTGCCGTTac                                                                >  1:741745/1‑142 (MQ=255)                                                                       tGCTTCGCCGCCACCGCCAATCAAATGAACGCAACAAACAAAAAAAGCTGGGCAGAGGATCTGCCCACTAAGCTCAACAACGGGACAATACGGAACAATGTCGAAAGGGATGTTACTGACAACGGCAGTAATTTTGCCGTTAg                                                                >  2:692572/1‑143 (MQ=255)                                                                        gCTTCGCCGCCACCGCCAATCAAATGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCAACGTCGATAATTTTGCCGTTAGc                                                               >  1:219096/1‑143 (MQ=255)                                                                         cTTCGCCGCCACCGCCAATCAAATGGACGTGTTGATCAATAAACCCTGGGCAGAGGATGTGCCCACTGAGAGCGACAACCGTGCAGTTCGGTACAACGTCACAAGGGATAACGCTGACAACGGCGATAATCTTGCCGTTAGcg                                                              >  2:313252/1‑143 (MQ=255)                                                                         cTTCGCCGCCACCGCCAATCAAATGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCAACGGCGATAATTTTGCCGTTAGcg                                                              >  1:751663/1‑143 (MQ=255)                                                                         cTTCGCCGCCACCGCCAATCAAATGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCAACGGCGATAATTTTGCCGTTAGcg                                                              >  1:198526/1‑143 (MQ=255)                                                                           tCGCCGCCACCGCCAATCAAATGGACGTGTAGATCTCGGAGGCCGCCGCAGCAGAACTACCAACAGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCAACGGCGATAATATTGCCGTTAGcgaa                                                            >  2:758624/1‑142 (MQ=255)                                                                              ccgccaccgccaATCAAATGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCAACGGCGATAATTTTGCCGTTAGCGACGAg                                                         <  2:300648/143‑1 (MQ=255)                                                                               cgccaccgccaATCAAATGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCAACGGCGATAATTTTGCCGTTAGCGACGAgg                                                        <  1:746224/143‑1 (MQ=255)                                                                                    ccgccaATCAAATGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCAACGGCGATAATTTTGCCGTTAGCGACGAGGACATc                                                   <  2:367489/143‑1 (MQ=255)                                                                                       ccaATCAAATGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCAACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCAACGGCGATAATTTTGCCGTTAGCACAGAGGACACCGCa                                                >  2:600859/1‑143 (MQ=255)                                                                                            accgaactgcacggttgtcgatctcagTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTg                                                                                         <  2:60957‑M1/70‑1 (MQ=255)                                                                                            accgaactgcacggttgtcgatctcagTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTg                                                                                         >  1:60957‑M1/28‑97 (MQ=255)                                                                                             aaaTGGACGTGGTGATCAATAAGACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCAACGGCGATAATTTTGCCGTTAGCGACGAGGACATCGCAAATTcc                                          <  2:21062/143‑1 (MQ=255)                                                                                              aaTGGACGTGTTGACCAATAATACCCGGGCAGAGTATCTTCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCAACGGCGATAATTTTGCCGTTAGCGACGAGGACATCGCAAATTccc                                         <  1:242299/143‑1 (MQ=255)                                                                                                tGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCAACGGCGATAATTTTGCCGTTAGCGACGCGGACATCGCAAATTGCCCg                                       >  1:757251/1‑143 (MQ=255)                                                                                                tGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCAACGGCGATAATTTTGCCGTTAGCGACGAGGACATCGCAAATTCCCCg                                       >  1:684661/1‑143 (MQ=255)                                                                                                      tgtTGATCAATAAATCCTGGGCAGAGGATCTGCCCACTGAGATCGACAACTGTGCAGTTTGGTATAATGTCAGAAGGGATATTGCTGGTAACGGCGATAATTTTGCCGTGAGCGACGAGGACATCGCAAATTCCCCGATCTTc                                 <  1:686033/143‑1 (MQ=255)                                                                                                        ttGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCAACGGCGATGATTTTGCCGGTAGCGACGAGGACATCGCAAATTCCCCGATCTTCCg                               >  1:427230/1‑143 (MQ=255)                                                                                                           aTCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCAGCGGCGATAATTTTGCCGTTAGCGACGAGGACATCGCAAGTTCCCCGGTCTTCCGgcg                            >  1:218444/1‑143 (MQ=255)                                                                                                              aaTAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCAACGGCGATAATTTTGCCGTTAGCGACGAGGACATCGCAAATTCCCCGATCTTCCGGCGCAt                         >  2:519788/1‑143 (MQ=255)                                                                                                                 tctcagtGGGCAGATCCTCTGCCAACTGAGATCGACAACCGTGCAGGGCGGTACAATGTCAGAAGGGATATTGCTGGCAACGGCGATAATGTTGCCGGTAGCGAGGAGTACAGCGCGAATGCCGCCATCGTCCCGCCCAGACa                      >  2:763381/7‑143 (MQ=255)                                                                                                                     ccTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCAACGGCGATAATTTTGCCGTTAGCGACGAGGACATCGCAAATTCCCCGATCTTCCGGCGCATACAAATg                  <  2:365755/143‑1 (MQ=255)                                                                                                                       tgggcagatcctctgcccaCTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCAACGGCGATAATTTTGCCGTTAGCGACGAGGACATCGCAAATTCCCCGATCTTCCGGCGCATACAAATgcg                >  1:463198‑M2/20‑143 (MQ=255)                                                                                                                       tgggcagatcctctgcccaCTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATAGTGCTGGCAACGGCGATAATTTTGCCGTTAGCGACGAGGACATCGCAAATTCCCCGATCTTCCGGCGCATACAAATgcg                >  2:14349‑M2/20‑143 (MQ=255)                                                                                                                       TGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCAACGGCGATAAGTTTGCCGTTAGCGACGAGGACATCGCAAATTCCCCGATCTTCCGGCGCATACAAATgcg                >  2:150999‑M1/1‑143 (MQ=255)                                                                                                                               ggATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCAACGGCGATAATTTTGCCGTTAGCGACGAGGACATCGCAAATTCCCCGATCTTCCGGCGCATACAAATGCGCTCCCTgc        <  2:198526/143‑1 (MQ=255)                                                                                                                                 agctgcccaCTGAGAGCGACAGCCGTGCAGTTCGGTACAAGGTCAGAAGGGATATTGCTGGCAACGGCGATAATTTTGCCGTTAGCGACGAGGACATCGCAAATTCCCCGATCTTCCGGCGCATACAAATGCGCTCCCTgcag      <  1:228614‑M2/134‑1 (MQ=255)                                                                                                                                  tctgcccaCTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCAACGGCGATAATTTTGCCGTTAGCGACGAGGACATCGCAAATTCCCCGATCTTCCGGCGCATACAAATGCGCTCCCTgcagc     >  1:554021‑M2/9‑143 (MQ=255)                                                                                                                                     gccctCTGAGATCGACAACCGTGCAGTTAGATAAGGTGGCATAAGGGATATTGCTGGCAACGGCGATAATTTTGCCGTTAGCGACGAGGACATCGCAAATTCCCCGATCTTCCGGCGCATACAAATGCGCTCCCTGCAGCAgg  <  2:185905‑M2/138‑1 (MQ=255)                                                                                                                                     gcccaCTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCAACGGCGATAATTTTGCCGTTAGCGACGAGGACATCGCAAATTCCCCGATCTTCCGGCGCATACAAATGCGCTCCCTGCAGCAgg  >  1:862837‑M2/6‑143 (MQ=255)                                                                                                                                          |                                                                                                                                          CAACCACTGACGTGACGCCCGCTTCCGTCAGGCGACTTAGCGCCACTTCCGGCGTGCGCGTCGTGGGACCTGCTTCGCCGCCACCGCCAATCAAATGGACGTGTTGATCAATAAAACCTGGGCAGAGGATCTGCCCACTGAGATCGACAACCGTGCAGTTCGGTACAATGTCAGAAGGGATATTGCTGGCAACGGCGATAATTTTGCCGTTAGCGACGAGGACATCGCAAATTCCCCGATCTTCCGGCGCATACAAATGCGCTCCCTGCAGCAGG  >  NC_000913/4559223‑4559497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.