New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 287080	34 (0.850)	3 (0.080)	3/254	NT	8.4%	coding (292/1611 nt)	yagH	CP4‑6 prophage; putative xylosidase/arabinosidase
	?	NC_000913	= 287086	33 (0.860)					coding (298/1611 nt)	yagH	CP4‑6 prophage; putative xylosidase/arabinosidase

GCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGCATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/286935‑287080 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgtTTTTCCACGGCGAGTCGACAATCTTCACGTCGGTGTAGAGCAGCCAGAATTTACCGTCGGCGTAGCTCAGGCACGGCGCCCAGATGCCGCCGGAGTCCGGGTTGCCCTTCATGTCCAGCATCGACACGCGGTCCAACGGGG  <  NC_000913/287086‑286946                                                                                                                                                                                                                                                                                                 GCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGCATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGC                                                                                                                                                  >  2:572044/1‑143                 TTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGCATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTTTTTCCACGGCGA                                                                                                                                  <  2:614711/143‑1                                                                        GGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTTTTTCCACGGCGAGTCGACAATC                                                                                                                        <  1:608873/98‑1                                                                        GGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTTTTTCCACGGCGAGTCGACAATC                                                                                                                        >  2:608873/1‑98                                                                                                                                                CGTTTTTCCGCGGCGAGTAGACAATCTTGACGTGGGTGTAGAGCAGCCAGGATGTACCGTCGGCGTAGCTCAGGCACGGCGCCCAGATGCCGCCGGAGTCCGGGTTGCCCTTCATGTCCAGCATCGACACGCGGTCCAACGGG   <  1:377951/143‑1                                                                                                                                                CGTTTTTCCACGGCGAGTCGACAATCTTCACGTCGGTGTAGAGCAGCCAGAATTTACCGTCGGCGTAGCTCAGGCACGGCGCCCAGATGCCGCCGGAGTCCGGGTTGCCCGTCATGTCCAGCATCGACACGCGGTCCAACGGG   <  2:275096/143‑1                                                                                                                                                 GTTTTTCCACGGCGAGTCGACAATCTTCACGTCGGTGTAGAGCAGCCAGAATTTACCGTCGGCGTAGCTCAGGCACGGCGCCCAGATGCCGCCGGAGTCCGGGTTGCCCTTCATGTCCAGCATCGACACGCGGTCCACCGGGG  >  1:627366/1‑143                                                                                                                                                                                                                                                                                                 GCTGGTCAGCACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGCATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/286935‑287080 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgtTTTTCCACGGCGAGTCGACAATCTTCACGTCGGTGTAGAGCAGCCAGAATTTACCGTCGGCGTAGCTCAGGCACGGCGCCCAGATGCCGCCGGAGTCCGGGTTGCCCTTCATGTCCAGCATCGACACGCGGTCCAACGGGG  <  NC_000913/287086‑286946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.