New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 287080	34 (0.850)	3 (0.080)	3/254	NT	8.4%	coding (292/1611 nt)	yagH	CP4‑6 prophage; putative xylosidase/arabinosidase
	?	NC_000913	= 287086	33 (0.860)					coding (298/1611 nt)	yagH	CP4‑6 prophage; putative xylosidase/arabinosidase

CACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGCATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG  >  NC_000913/286944‑287226                                                                                                                                               |                                                                                                                                             cACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGCATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGaaaa                                                                                                                                              >  1:301230/1‑143 (MQ=255)   ccccGGTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGCATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAac                                                                                                                                            >  1:627366‑M2/1‑141 (MQ=255)    cccGTTGGACCGCGTGTCGATGCTGGACATGACGGGCAACCCGGACTCCGGCGGCATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAacg                                                                                                                                           <  2:275096‑M2/143‑4 (MQ=255)    cccGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGCATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTACATCCTGGCTGCTCTACACCCACGTCAAGATTGTCTACTCGCCGCGGAAAAacg                                                                                                                                           <  1:377951‑M2/143‑4 (MQ=255)       gTTGGTCCGCGTGGCGGTGTGGGGGATGGAGGGCAACGCGGACTCCGGCGGCATCGGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGcc                                                                                                                                        <  2:632668/143‑1 (MQ=255)                           tGGGCATGAAGGTCAACCCGGACTCCGGCGGCATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATCGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACcgcg                                                                                                                    <  2:446033/143‑1 (MQ=255)                           tGGACATGAAGGGCAACCCGGACTCCGGCGGCATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAGATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAGCGGCCGCAACTTCCTCGTCACcgcg                                                                                                                    >  1:254906/1‑143 (MQ=255)                              gcATGAAGGGCGACCTGGGCTCCGGCTGCATCTGCGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGGTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGccc                                                                                                                 <  2:55670/142‑1 (MQ=255)                              aCATGAAGGGCAACCCGGACTCCGGCGGCATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCCCCGCGccc                                                                                                                 >  1:666838/1‑143 (MQ=255)                                aTGAAGGGCAACCCGGACTCCGGCGGCATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTGCCTCGTCACCGCGCCCTc                                                                                                               >  2:15339/1‑143 (MQ=255)                                      ggCAACCCGGACTCCGGCGGCATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGa                                                                                                         >  2:562633/1‑143 (MQ=255)                                       gCAACCCGGACTCCGGCGGCATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAg                                                                                                        <  1:727925/143‑1 (MQ=255)                                       gCAACCCGGACTCCGGCGGCATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAg                                                                                                        <  1:376174/143‑1 (MQ=255)                                       gCAACCCGGACTCCGGCGGCATCCGGGCGCCGTGCCTGCGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAg                                                                                                        <  1:410835/143‑1 (MQ=255)                                        cAACCCCGACTCCGGCGGCATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAgg                                                                                                       <  1:760936/143‑1 (MQ=255)                                           cccGGACTCCGGCGGCACCTGCGCGCCGCGCCTGAGCTACGCCGACGGTAAATCCTGGCTGCGATCCACAGACGTGCTGATTGTCGACTCGCCGTCGAAACCCGGCCGCAATTTCGTCGTCACCGCGCCCTCCATCGAGGGGc                                                                                                    <  2:427688/143‑1 (MQ=255)                                               gACTCCGGCGGCATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATg                                                                                                <  1:434772/143‑1 (MQ=255)                                                    cggcggCATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGgagcg                                                                                           >  2:538494/1‑143 (MQ=255)                                                      gcggcATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGgagcgag                                                                                         >  1:786471/1‑143 (MQ=255)                                                                 gcgcCGTGCCCGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCATCTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGAt                                                                              <  1:275096/143‑1 (MQ=255)                                                                         ccTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCAGTAGAAAAAAGGACAAAAATTCCTCGTCACCGCGCACTCCATCGAGAGGCCATGGAGCGAGACAATCCCGATGGGCAAcg                                                                      >  1:160560/1‑143 (MQ=255)                                                                            gAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAAcggcg                                                                   >  1:161662/1‑143 (MQ=255)                                                                             aGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAAcggcgg                                                                  <  1:758115/143‑1 (MQ=255)                                                                                      gACGGTCATTTCTGGTCGCGCTACGCCGACGTGCGGATTGTCGGGTCTCCGTGGAAGACCGGCCGCAACTTCCTCTTCACCGCGCCCCCCATCGAGGGGCCATGGAGCGAGCCAATCCCTATGGGCAACGGCTGGTGTGAccc                                                         <  2:394484/143‑1 (MQ=255)                                                                                          gTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGCCCCGTcc                                                     >  1:5/1‑143 (MQ=255)                                                                                            aaaTTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCTCGATGGGCAACGGCGGGTTTGACCCGTCCCt                                                   >  1:168061/1‑143 (MQ=255)                                                                                             aaTTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGAAGGGGAACGGCGGGCTATACCCGTCCCTg                                                  >  2:630634/1‑143 (MQ=255)                                                                                               ttCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACCGCGGGTTTGACCCGTCCCTGtt                                                >  1:477147/1‑143 (MQ=255)                                                                                                ccTGGCGGCTCTCCCCCGACCTGAAGCTCGTCGACTCGCCGCGGAACAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTc                                               <  1:739514/142‑1 (MQ=255)                                                                                                 cggggcgctCTACGCCGACGTGAGGCTGGTCGCCTCGCCGTGGAAAAACGGCCGCAACTTCCCCGGCACCGCGCCCTCCAGCGAGGCGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTcc                                              <  2:290955/137‑1 (MQ=255)                                                                                                         tctACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCAAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCCGTTCCacgacgac                                      >  1:412019/1‑143 (MQ=255)                                                                                                              acCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCACGGGGCCATGGAGCGAGCCAATCCCGATGGGCAGCGGCCCGTTTGACCCGCCCCTGTTCCCCGACGACGCTgg                                 >  1:329358/1‑143 (MQ=255)                                                                                                                cGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACCACGCCGCTGGcc                               >  1:308455/1‑143 (MQ=255)                                                                                                                       aaGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCTAATCCCGATGGGAACCGGCGGGTTCGACCCGGCCCTGTCCCCCGCCGCCGATGGCCGCaaaca                        >  2:590943/1‑141 (MQ=255)                                                                                                                         gATTGTCGACTCGCCGTGGAAAAacggcgagtcgacaatcttcacgtcggtgtagagcagccagaatttaccgtcggcgtagctcaggcacggcgccc                                                                   <  1:608873‑M2/98‑76 (MQ=255)                                                                                                                         gATTGTCGACTCGCCGTGGAAAAacggcgagtcgacaatcttcacgtcggtgtagagcagccagaatttaccgtcggcgtagctcaggcacggcgccc                                                                   >  2:608873‑M2/1‑23 (MQ=255)                                                                                                                         gATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCCACGGCGGGTTTGACCCGTCCCTGTTCCACGGCGCCGATGGCCGCAAATACt                      >  2:640975/1‑143 (MQ=255)                                                                                                                         gATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACt                      <  1:15339/143‑1 (MQ=255)                                                                                                                                 aCTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGGTTGACCCGTCCCCGTTCCCCGACAACGATGGCCGCAAATACCGTAACTAc              >  2:223204/1‑143 (MQ=255)                                                                                                                                   tCGCCGTGGAAAAacggcgagtcgacaatcttcacgtcggtgtagagcagccagaatttaccgtcggcgtagctcaggcacggcgcccagatgccgccggagtccgggttgcccttcatgtccagcatcgacacgcggtccaa            <  2:614711‑M2/143‑131 (MQ=255)                                                                                                                                     gCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCAAATCCCGATGGGCAACGGCGGGTTGGACCCGGCCCTGTTCCACGACGCCGATGGCCGCAAATACTATCTCTACCGcc          >  1:434196/1‑143 (MQ=255)                                                                                                                                           gAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGGCCCGTCCCTGTTCCCCGACGACGATGGCCGCAAAACCTACATCTACCGCCCGTggg    >  2:402916/1‑143 (MQ=255)                                                                                                                                             aaaaCGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGGTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCACATACTACATCTACCGCCAGgggggg  >  2:325903/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                             CACCCCGTTGGACCGCGTGTCGATGCTGGACATGAAGGGCAACCCGGACTCCGGCGGCATCTGGGCGCCGTGCCTGAGCTACGCCGACGGTAAATTCTGGCTGCTCTACACCGACGTGAAGATTGTCGACTCGCCGTGGAAAAACGGCCGCAACTTCCTCGTCACCGCGCCCTCCATCGAGGGGCCATGGAGCGAGCCAATCCCGATGGGCAACGGCGGGTTTGACCCGTCCCTGTTCCACGACGACGATGGCCGCAAATACTATATCTACCGCCCGTGGGGG  >  NC_000913/286944‑287226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.