New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3735295	32 (0.800)	3 (0.080)	3/250	NT	8.3%	coding (317/1179 nt)	xylR	DNA‑binding transcriptional dual regulator XylR
	?	NC_000913	= 3735302	36 (0.950)					coding (324/1179 nt)	xylR	DNA‑binding transcriptional dual regulator XylR

GAGATGGCGTCATTGCCGACTTCGACGACAAACAGATCGAGCAAGCGCTGGCTGATGTCGACGTCCCCATTGTTGGGGTTGGCGGCTCGTATCACCTTGCAGAAAGTTACCCACCCGTTCATTACATTGCCACCGATAACTATGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3735148‑3735295 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcgctTTCAACCAGCGCATAGTTATCGGTGGCAATGTAATGAACGGGTGGGTAACTTTCTGCAAGGTGATACGAGCCGCCAACCCCAACAATGGGGACGTCGACATCAGCCAGCGCTTGCTCGATCTGTTTGTCGTCGAAG  <  NC_000913/3735302‑3735167                                                                                                                                                                                                                                                                                              GAGATGGCGTCATTGCCGACTTCGACGACAAACAGATCGAGCAAGCGCTGGCTGATGTCGACGTCCCCATTGTTGGGGTTGGCGGCTCGTATCACCTTGCAGAAAGTTACCCACCCGTTCATTACCTTGCCACCGATAACTAT                                                                                                                                               >  2:56651/1‑143  AGATGGCGTCATTGCCGACTTCGACGACAAACAGATCGAGCAAGCGCTGGCTGATGTCGACGTCCCCATTGTTGGGGTTGGCGGCTCGTATCACCTTGCAGAAAGTTACCCACCCGTTCATTACATTGCCACCGATAACTATG                                                                                                                                              >  2:23680/1‑143     TGGCGTCATTGCCGACTTCGACGACAAACAGATCGAGCAAGCGCTGGCTGATGTCGACATCCCCATTGTTGGGGTTGGCGGCTCGTATCCCCTTGCCGAAAGTTACCCACCCGTTCATTACATTACCACCGATAACTATACGC                                                                                                                                           >  1:278413/1‑143           CATTGCCGACTTCGACGACAAACAGATCGAGCAAGCGCTGGCTGATGTCAACGTCCCCATTGATGGGGTTGGCGGCTCGTATCACCTGGCAGAAACTTACCCCCCCGTTCATTACATTGCGACTGATAACTATGCGacgcttg                                                                                                                                     >  2:174493/1‑136                     TTCGACGACAAACAGATCGAGCAAGCGCTGGCTGATGTCGACGTCCCCATTGTTGGGGTTGGCGGCTCGTATCACCTTGCAGAAAGTTACCCACCCGTTCATTACATTGCCACCGATAACTATGCGCTTTCAACCAGCGCATA                                                                                                                           <  1:105574/143‑1                                         GCAAGCGCTGGCTGATGGCGACGTCCCCATTGTTGGGGTTGGCGGCCCGTATCACCTTGCAGAAAGTTACCCCCCCGTTCATTACATTGCCACCGATAACTATGCGCTTTCAACCAGCGCATAGTTATCGGTGGCAATGTAAT                                                                                                       <  1:2374/143‑1                                                                                                     AGAAAGTTACCCACCCGTTCATTACATTGCCACCGATAACTATGCGCTTTCAACCAGCGCATAGTTATCGGTGGCAATGTAATGAACGGGTGGGTAACTTTCGGGAAGGTGATACGGGCCGCCAACACCAACAACGGGGACGT                                           >  1:571139/1‑143                                                                                                                                              acGCGCTTTCAACCAGCGCATAGTTAGCGGTGGCAATGTAATGAACGGGTGGGTAACTTTCTGCAAGGTGATACGAGCCGCCAACCCCAACAATGGGGACGTCGACATCAGCCAGCGCTTGCTCGATCTGTTTGTCGTCGAAG  <  2:291453/141‑1                                                                                                                                                                                                                                                                                              GAGATGGCGTCATTGCCGACTTCGACGACAAACAGATCGAGCAAGCGCTGGCTGATGTCGACGTCCCCATTGTTGGGGTTGGCGGCTCGTATCACCTTGCAGAAAGTTACCCACCCGTTCATTACATTGCCACCGATAACTATGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3735148‑3735295 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcgctTTCAACCAGCGCATAGTTATCGGTGGCAATGTAATGAACGGGTGGGTAACTTTCTGCAAGGTGATACGAGCCGCCAACCCCAACAATGGGGACGTCGACATCAGCCAGCGCTTGCTCGATCTGTTTGTCGTCGAAG  <  NC_000913/3735302‑3735167

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.