| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3735295 | 32 (0.800) | 3 (0.080) | 3/250 | NT | 8.3% | coding (317/1179 nt) | xylR | DNA‑binding transcriptional dual regulator XylR |
| ? | NC_000913 | = 3735302 | 36 (0.950) | coding (324/1179 nt) | xylR | DNA‑binding transcriptional dual regulator XylR | |||||
CTTCGACGACAAACAGATCGAGCAAGCGCTGGCTGATGTCGACGTCCCCATTGTTGGGGTTGGCGGCTCGTATCACCTTGCAGAAAGTTACCCACCCGTTCATTACATTGCCACCGATAACTATGCGCTGGTTGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCTTTTTATGGTCTTCCGGAATCAAGCGGCAAACGTTGGGCCACTGAGCGCGAATATGCATTTCGTCAGCTTGTCGCCGAAGAAAAGTATCGCGGAG > NC_000913/3735167‑3735441 | cTTCGACGACAAACAGATCGAGCAAGCGCTGGCTGATGTCGACGTCCCCATTGTTGGGGTTGGCGGCTCGTATCACCTTGCAGAAAGTTACCCACCCGTTCATTACATTGCCACCGCTAACTATGCGCTGGTTGAAagcgcgt < 2:291453‑M2/143‑8 (MQ=255) gacgacAAACAGATCGAGCAAGCGCTGGCTGATGTCGACGTCCCCATTGTTGGGGTTGGCGGCTCGTATCACCTTGCAGCAAGGGCCGCACCCGTTCATTACATTGCCACCGATAACTATGCGCTGGTTGAAAGCGCAttttt > 1:362904/1‑143 (MQ=255) aCAGATCGAGCAAGCGCTGGCTGATGTCGACGTCCCCAATGTTGGGGTTGGCGGCTCGTATCACCTTGCAGAAAGTTACCCACCCGTTCATTACATTGCCACCGATAACTATGCGCTGGTTGAAAGCGCATTTTTGCATTTaa > 1:786047/1‑143 (MQ=255) cGAGCAAGCGCTGGCTGATGTCGACGTCCCCATTGTTGGGGTTGGCGGCTCGTATCACCTTGCAGAAAGTTACCCACCCGTTCATTACATTGCCACCGATAACTATGCGCTGGTTGAAAGCGCATTTTTGCATTTAAAAgaga > 1:521710/1‑143 (MQ=255) aGCAAGCGCTGGCTGATGTCGACGTCCCCATTGTTGGGGTTGGCGGCTAGTACCACCTTGCAGAAAGTTACCCACCCGTTCATTACATTGCCACCGATAACTATGCGCTGGTTGAAAGCGCATTTTTGCATTTAAAAGAGaaa < 1:572827/143‑1 (MQ=255) cAAGCGCGGGCTGATGTCGACGTCCCCATTGTTGGGGTTGGCGGCTCGTATCACCTTGCAGAAAGTTACCCACCCGTTCATTACATTGCCACCGATAACTATGCGCTGGTTGAAAGCGCATTTTTGCATTTAAAAGAGAAAgg < 1:274872/143‑1 (MQ=255) ctggcggAGGGCGACGGCCCCATTGTTGGGGTGGGCGGCGCGTATCACCTTGCAGAAAGTTACCCACCCGTTCATTACATTGCCACCGATAACTATGCGCTGGGTGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTaa < 1:728223/143‑1 (MQ=255) gACGTCCCCATTGTTGGGGTTGGCGGCTCGTATCACCTTGCAGAAAGTTACACAGCCGTTCATTACATTGCCACAGATAACTATGCGCTGGTTCAAAGCGACTTTTTGCATTTACACGCGGAAGGCGGCAGCCgattcgcttc > 2:543182/1‑142 (MQ=255) aCGTCCCCGTTGTTGGTGTTGGCGGCCCGTATCACCTTCCCGAAAGTTACCCACCCGTTCATTACATTGCCACCGATAACTATGCGCTGGTTGAAagcgcatagttatcggtggcaatgtaatgaacgggtgggtaactttct > 1:571139‑M2/1‑95 (MQ=255) cGTCCCCATGGTTGGGGTTGGCGGCTCGTATCACCTTGCAGAAAGTTACCCACCCGTTCATTACATTGCCACCGATAACTATGCGCTGGTTGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCttttt < 1:23680/143‑1 (MQ=255) gTCCCCATTGTTGGGGTTGGCGGCTCGTATCACCTTGCAGAAAGTTACCCACCCAGTCAGTACATTGCCACCTATAACTATGCGCTGGTTGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCGTTTTa < 1:521755/143‑1 (MQ=255) tCCCCATTGTTGGGGCTGGCGGCTCGTATCACCTTGCAGAAAGTTACCCACCCGTTCATTACATTGCCACCGATAACTATGCACTGGTTGAAAGCGCATTTTTACATTTAAAAGAGAAAGGCCTTAAACgcattgccttatct > 2:789049/1‑139 (MQ=255) ccccATTGTTGGGGTTGGCGGCTCGTATCACCTTGCAGAAAGTTACCCACCCGTTCATTACATTGCCACCGATAACTATGCGCTGGTTGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCTTTTTATg < 2:362904/143‑1 (MQ=255) cccATTGTTGGGGTTGGCGGCTCGTATCACCTTGCAGAAAGTTACCCACCCGTTCATTACATTGCCACCGATAACTATGCGCAGGTTGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCAtattatcg > 2:273004/1‑141 (MQ=255) ccATTGTTGGGGTTGGCGGCTCGTATCACCTTGCAGAAAGTTACCCACCCGTTCATTACATTGCCACCGATAACTATGCGCTGGTTGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCTTTTTATGGt < 1:710700/143‑1 (MQ=255) tgttgGGGTTGGCGGCTCGTATCACCTTGCAGAAAGTTACCCACCCGTTCATTACATTGCCACCGATAACTATGCGCTGGTTGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCTTTTTATGGTCTTc < 2:620897/143‑1 (MQ=255) gggTTGGCGGCTCGTATCACCTTGCAGAAAGTTACCCACCCGTTCATTACATTGCCACCGATAACTATGCACTGGTTGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCTTTTTATGGTCTTCCGGaa < 1:205525/143‑1 (MQ=255) cggcTCGGATCACCTTGCAGACAGGTACCCACCCGCTCATTACATTGCCCCCGATAACTATGCGCTGGTTGAAAGCGCAGTTTTGCATTGAAAAGAGAAAGGCGTTAACCGCTTTGCTTTTTATGGTCTTCCGGAATCAAGCg < 2:470382/143‑1 (MQ=255) cACCTTGCAGAAAGTTACCCCCCCGTTCATTACATTGCCACCGATAACTATGCGCTGGTTGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCTTTTTATGGTCTTCCGGAATCAAGCGGCAAACGTTg < 1:692457/143‑1 (MQ=255) aCCTTGCAGAAAGTTACCCACCCGTTCATTACATTGCCACCGATAACTATGCGCTGGTTGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCTTTTTATGGTCTTCCGGAGTCAAGCGGCAAACGTTgg > 1:42305/1‑143 (MQ=255) ccacccGTTCATTACATTGCCACCGATAACTATGCGCTGGTTGAAAGCGCATTTTTGCATTTAAAAGCGCAAGGCGTTAACCGCGTTGCTTTTTATGGTCTTCGGGAATCAAGCGGCAAAAGGTGGGCCACTGAGCGCGaaag > 2:509966/1‑141 (MQ=255) ccacccGTTCATTACATTGCCACCGATAACTATGCGCTGGTTGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCTTTTTATGGTCTTCCGGAATCAAGCGGCAAACGTCGGGCCACTGcgcgcgccta > 1:258116/1‑139 (MQ=255) cacccGTTCATTACATTGCCACCGATAACTATGCGCTGGTTGAAAGCGCATTTTTGCATTTAACAGAGAAAGGCGTTAACCGCTTTTCTTTTTATGGTCTCCCGGCATCAAGCGGCCAACGCTGGGCCACTGAGCGCGaccac > 2:233482/1‑139 (MQ=255) cccGTGCATTACATTGCGACCGATAACTATGCGCTGGTTGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCTTTTTATGGTCTTCCGGAATCAAGCGGCAAACGTTGGGCCACTGAGCGCGAATATGc < 1:583873/143‑1 (MQ=255) tCATTACATTGCCACCGATAACTATGCGCTGGTTGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCTTTTTATGGTCTTCCGGAATCAAGCGGCAAACGTTGGGCCACTGAGCGCGAATATGCAATTc > 2:706721/1‑143 (MQ=255) aTTACATTGCCACCGATAACTATGCGCTGGTTGAAagcgcatagttatcggtggcaatgtaatgaacgggggggtaactttctgcaaggtgatacgggccgccaaccccaacaatggggacgtcgccatcagccagcgcttgc < 1:2374‑M2/143‑109 (MQ=255) aTTACATTGCCACCGATAACTATGCGCTGGTTGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCTTTTTATGGTCTTCCGGAATCAAGCGGCAAACGTTGGGCCACTGAGCGCGAATATGCATTTCGt < 1:227741/143‑1 (MQ=255) ttACATTGCCACCGATAACTATGCGCTGGTTGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCTTTTTATGGTCTTCCGGAATCAAGCGGCAAACGTTGGGCCACTGAGCGCGAATATGCATTTCGTc < 1:559903/143‑1 (MQ=255) ccACCGGTAACTATGCGCTGGTTGAAAGCGCATGTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCTTTTTATGGTCTTCCGGAATCAAGCGGCAAACGTTGGGCCACTGAGCGCGAATATGCATTTCGTCAGCTTGTc < 1:788750/143‑1 (MQ=255) ccACCGATAACTATGCGCTGGTTGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCTGTTCATGGTCTTCCGGAATCAAGCGGCAAACGCTGGGCCACTGAGCGCGCATATGCACTTCGCCAGCTAGTc > 2:341296/1‑143 (MQ=255) cACCGATAACTATGCGCTGGTGGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCTTTTTATGGTCTTCCGGAATCAAGCGGCAAACGTTGGGCCACTGAGCGCGAATATGCATTTCGTCAGCTTGTCg < 2:786047/143‑1 (MQ=255) cGATAACTATGCGCTGGTTGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCTCTTTATGGTCTTCCGGAATCAAGCGGCGGTGGTTGTGCCACGGATCGCGAATATGCATTTCGTCAGCTTGTCGCCg > 2:555129/1‑143 (MQ=255) cTATGCGCTGGTTGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCTTTTTATGGTCTTCCGGAATCAAGCGGCAAACGTTGGGCCACTGAGCGCGAATATGCATTTCGTCAGCTTGTCGCCGAAGaaa < 1:56651/143‑1 (MQ=255) tATGCGCTGGTTGAAagcgcatagttatcggtggcaatgtaatgaacgggtgggtaactttctgcaaggtgatacgagccgccaaccccaacaatggggacgtcgacatcagccagcgcttgctcgatctgtttgtcgtcgaa < 1:105574‑M2/143‑129 (MQ=255) tATGCGCTGGTTGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTATGCTTTTTATGGTCTTCCGGAATCAAGCGGCAAACGTTAGGGCAATGAGAGCGAATATGCATCTCGTAAGCTTGTCACCCAAGcaaa > 2:412951/1‑143 (MQ=255) tATGCGCGGGTTGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCTTTTTATGGTCTTCCGGAATCAAGCGGCAAACGTTGGGCCACTGAGCGCAAATATGCATTTCGTCAGCTTGTCGCCGAAGaaaa < 2:242632/143‑1 (MQ=255) gcTGGTTGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCTTTTTATGGTCTTCCGGAATCAAGCGGCAAACGTTGGGCCACTGAGCGCGAATATGCATTTCGTCAGCTTGTCGCCGAAGAAAAGTATc > 1:489156/1‑143 (MQ=255) gcTGGTTGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCTGTTTATGGTCTTCCGGAATCAAGCGGCAAACGTTGGGCCACTGAGCGCGAGTATGCATTTCGTCAGCTGGTCGCCGAAGGAAAgacac > 2:413486/1‑139 (MQ=255) cTGGTTGAAAGCGCATTTTTGCATTTAAAAGGTAAAGGCGCTAGCCGCTTTGCTTTTTATGGTCTTCCGGAATCAAGCGGCAAACGTTGGGCCACTGAGCGCGAATATGCATTTCGTCAGCTTGTCGCCGAAGAAAAGTATcg < 1:291453/143‑1 (MQ=255) cTGGTTGAAAGCGCATTTTTGCATGTAAAAGAGTCAGGCGTTAACCGCTTTGCTTTTTATGGTCTTCCGGAATCAAGCGGCAAACGTTGGGCCACTGAGCGCGAATATGCATTTCGTCAGCTTGTCGCCGAAGAAAAGTATcg > 2:97008/1‑143 (MQ=255) gTTGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCTTTTTATGGTCTTCCGGAATCAAGCGGCAAACGTTGGGCCACTGAGCGCGAATATGCATTTCGTCAGCTTGTCGCCGAAGAAAAGTATCGCgg > 2:102025/1‑143 (MQ=255) ctggaaGCGCATTTTGGCATTTCAAAGAGAAAGGCGTTAATCGGTTTGCTTTTTATGGTCTTCCGGAATCAAGCGGCAAACGTTGGGCCACTGAGCGCGAATATGCATTTCGTCAGCTTGTCGCCGAAGAAAAGTATCGCGGa < 1:444070/139‑1 (MQ=255) tGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCTTTTTATGGTCTTCCGGAATCAAGCGGCAAACGTTGGGCCACTGAGCGCGAATATGCATTTCGTCAGCTTGTCGCCGAAGAAAAGTATCGCGGAg > 1:251277/1‑143 (MQ=255) | CTTCGACGACAAACAGATCGAGCAAGCGCTGGCTGATGTCGACGTCCCCATTGTTGGGGTTGGCGGCTCGTATCACCTTGCAGAAAGTTACCCACCCGTTCATTACATTGCCACCGATAACTATGCGCTGGTTGAAAGCGCATTTTTGCATTTAAAAGAGAAAGGCGTTAACCGCTTTGCTTTTTATGGTCTTCCGGAATCAAGCGGCAAACGTTGGGCCACTGAGCGCGAATATGCATTTCGTCAGCTTGTCGCCGAAGAAAAGTATCGCGGAG > NC_000913/3735167‑3735441 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |