New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1069909	55 (1.380)	4 (0.110)	3/250	NT	7.2%	coding (446/495 nt)	rutF	flavin reductase
	?	NC_000913	= 1069921	51 (1.350)					coding (434/495 nt)	rutF	flavin reductase

CTGTAGAGGTCGATTTTAACTGCCAGTGAGGAAAACCGAACATTGCCATCAGCTGTCTCCTTAAGGAGGTTAACAAGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCGTGGGTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCT  >  NC_000913/1069791‑1070053                                                                                                                                   |                                                                                                                                     ctGTAGAGGTGGGTGTCAACTGCCAGTGAGGAAAACCGAACATTGCCATCAGCTGTCTCCTTAAGGAGGTTAACAAGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGAt                                                                                                                          <  2:629597/143‑1 (MQ=255) ctGTAGAGGTCGATTTTAACTGCCAGTGAGGAAAACCGAACATTGCCATCAGCTGTCTCCTTAAGGAGGTTAACAAGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGAt                                                                                                                          <  2:290173/143‑1 (MQ=255)  agTAGAGGACGATTGTAACGGCCAGTGAGGAAAACCGGACAGTGCCACCCGCTGTCTCCTGAAGGAGGATAACAAGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGAAGGGTGTGGTGTGACGATg                                                                                                                         >  2:524108/2‑143 (MQ=255)      gagGTCGTTTTTTATTGCCAGTGAGGAATACCTAACATTGCTATCAGCTATCTCCTTAAGGAGGTTAACAAGCAGGGCGCATCAGTGCGTGATAACTGCGATCGAACCACATTAGCCTGTATGGTGTGGTGTGACGATGAATc                                                                                                                     <  2:206963/143‑1 (MQ=255)          tCGATTTTAACTGCCAGTGAGGAAAACCGAACATTGCCATCAGCTGTCTCCTTAAGGAGGTTAACAAGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCtt                                                                                                                 >  1:787270/1‑143 (MQ=255)          tCGATGTTAACTGCCAGTGAGGAAAACCGAACATTGCCATCAGCTGTCTCCTTAAGGAGGTTAACAAGCAGGCCGCCTCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCtt                                                                                                                 <  2:593913/143‑1 (MQ=255)            gATTTTAACTGCCAGTGAGGAAAACCGAACATTGCCATCAGCTGTCTCCTTAAGGAGGTTAACAAGCAGGGCGCATCAGCGCGTGATAACGGCGATCGAACCACCCCAGCCCGTAGGGTGTGAGGTGACGCTGAATCGCTTcc                                                                                                               >  2:125039/1‑142 (MQ=255)              ttttAACTGCCAGTGAGGAAAACCGAACATTGCCATCAGCTGTCTCCTTAAGGAGGTTAACAAGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTGCGAt                                                                                                             >  2:23471/1‑143 (MQ=255)                                aaaaCCGAACATTGCCATCAGCTGTCTCCTTAAGGAGGTTAACAAGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTc                                                                                           >  2:266504/1‑143 (MQ=255)                                 aaaCCGAACATTGCCATCAGCTGTCTCCTTAAGGAGGTTAACAAGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCg                                                                                          >  1:442322/1‑143 (MQ=255)                                 aaaCCGAACATTGCCATCAGCTGTCTCCTTAAGGAGGTTAACAAGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCg                                                                                          >  1:475080/1‑143 (MQ=255)                                   aCCGAACATTGACATCAGCTGGCTCCTTAAGGGGGTTAACAAGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGACTGTCGTg                                                                                        <  2:18549/143‑1 (MQ=255)                                    ccGAACATTGCCATCAGCTGTCTCCTTAAGGAGGTTAACAAGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCGTgg                                                                                       <  2:487857/143‑1 (MQ=255)                                    ccGAACATTGCCATCAGCTGTCTCCTTAAGGAGGTTAACAAGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCATgg                                                                                       >  1:231467/1‑143 (MQ=255)                                    ccGAACATTGCCATCAGCTGTCTCCTTAAGGAGGTTAACAAGCAGGGCGCATCAGCGCGAGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCGTgg                                                                                       <  1:214957/143‑1 (MQ=255)                                     cGAACATTGCCATCAGCTGTCTCCTTAAGGAGGTTAACAAGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCTCAAAACAGCATGTCGTggg                                                                                      >  2:636491/1‑143 (MQ=255)                                      gAACATTGCCATCAGCTGTCTCCTTAAGGAGGTTAACAAGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCGTGGGt                                                                                     >  2:151098/1‑143 (MQ=255)                                        aCATTGCCACCAGCTGTCTCCTTAAGGAGGTTATCAAGCAGGGCGCATCAGCGCGTGTTAACTGTGATCGAACCAGACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCGTGGGTGc                                                                                   <  1:195530/143‑1 (MQ=255)                                             gCCACCACCTGTCCCCTGAAGGAGGTCAACAAGCCGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCGTGGGTGCCGACg                                                                              <  1:196352/143‑1 (MQ=255)                                               cATCAGCTGGCGCCTTAAGGCGGTTACCAAGCAGGTAGCTAGTGCGTGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCGTGGGTGCCGACGCt                                                                            <  1:65460/143‑1 (MQ=255)                                                agcAGCTGTCTCCTTAAGGAGGTTAACAAGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCGTGGGTGCCGACGCTc                                                                           <  2:593869/141‑1 (MQ=255)                                                   aGCTGTCTCCTTAAGGAGGTTAACAAGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCACAACAGAATGTCGTGGGGGCCGAGGCTcacc                                                                        >  2:367208/1‑143 (MQ=255)                                                       gTCTCCTTAAGGAGGTTAACAAGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCGTGGGTGCCGACGCTCACCACCt                                                                    >  2:483042/1‑143 (MQ=255)                                                        tctcCTTAAGGAGGTTAACAAGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGCGTGGTGTGACGATGAATCGCTTCGACGGCGCACAACAGAATGTCGTGGGTGCCGACCCCCACCCCCTg                                                                   >  2:575765/1‑143 (MQ=255)                                                             ttAAGGAGGTTAACAAGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAGAACAGAATGGCGTGGGTGCCGACGCTCCCCCCCTGGCTgg                                                              >  1:171378/1‑142 (MQ=255)                                                               aaGGAGGTTAACAAGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAACCAGAATGTCGTGGGTGCCGCCGCTCACCACCTGACTGATa                                                            >  2:694630/1‑143 (MQ=255)                                                                 ggaggTGAACAAGCAGGGCGCATCAGGCCGTGATAACTGCGATCGAACCACGCCAGCGCGTATGGTGTGGTGCGACGATCACGCGCTTCGATGGCGCAAAACAGAATGTCGTGGGTGCCGACGCTCACCACCTGGCTGATACg                                                          <  2:131125/143‑1 (MQ=255)                                                                   aggTTAACAAGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCGTGGGTGCCGACGCTCACCACCTGGCTGATACGGc                                                        <  1:251634/143‑1 (MQ=255)                                                                     gTTAACAAGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCGTGGGTGCCGACGCTCACCCCCTGGCTCATCCCGCAg                                                      >  2:783345/1‑143 (MQ=255)                                                                     gTTAACAAGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAACGTCGTGCGTGCCGACCCTCACCACCTGGCTGAAAcagcag                                                      >  1:646187/1‑143 (MQ=255)                                                                     gTTAACAAGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGGGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGCATGTCGTGGGTGCCGACGCTCACCACCTGGCTGGGACGGGAg                                                      >  1:12260/1‑143 (MQ=255)                                                                           gaGCGGGGCGCATCAGCGCGTGATATCTGCGATCGAAGTACGCCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAATACAGAATGTCGTGGGTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAAc                                                <  2:641048/142‑1 (MQ=255)                                                                           aggCAGGTCGGAGCAGCGCGTGCTAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCGTGGGTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAAc                                                <  2:671977/141‑1 (MQ=255)                                                                            aGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGACTCGCAACGAGGGCGCCAAACAGAAAGGCGTGGGTGCCGGCGCTCACCACCTGGCGGATACGGCAGTccgacg                                               >  2:638747/1‑138 (MQ=255)                                                                               aGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTGGGGTGTGGTGTGACGATGAAGCGCTTCGATGGCGCAAAACAGAATGTCGTGTGTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAACGaaa                                            <  1:236924/143‑1 (MQ=255)                                                                                 ggCGCATCAGCGCGTGATAACTGCGGTCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAAt                                                                                                                      >  1:400464/1‑67 (MQ=255)                                                                                 ggCGCATCAGCGCGTGATAACTGCGGTCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAAt                                                                                                                      <  2:400464/67‑1 (MQ=255)                                                                                   cgcATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGGCGATGAATCGCTTCGATGGCGCAAAACAGAATGTCGTGGGTGCCGACGCTCGCCACCTGGCTGCAACGGCCGTCAAACGAAGCCag                                        >  2:696041/1‑143 (MQ=255)                                                                                    tcATCAGCGCGTGTTACCTGCCATCTAACTCCACTCGCTCATACAGTTCGGCGCGACGATGAATCGCTTCGATGCCGCAAAGCACAATGTCGTGGCTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCaga                                       <  2:491090/142‑1 (MQ=255)                                                                                              gTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCGTGGGTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCa                             <  1:269955/143‑1 (MQ=255)                                                                                                   gaCTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGGATGTCGTGGGTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGc                        <  2:476539/142‑1 (MQ=255)                                                                                                    aCTGCGATCGAACCACTCCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCGTGGGTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCg                       <  2:714711/143‑1 (MQ=255)                                                                                                    aCTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGGATGTCGTGGGTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCg                       <  2:475080/143‑1 (MQ=255)                                                                                                     cTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCGTGGGTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCgg                      <  1:226510/143‑1 (MQ=255)                                                                                                     cTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCGTGGGTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCgg                      <  2:787270/143‑1 (MQ=255)                                                                                                     cTGCGAGCGACCCACCCCAGCCCGCAGGGGGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCGTGGGTGCCGACGCGCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCgg                      <  2:670788/143‑1 (MQ=255)                                                                                                      tGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCGTGGGTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCGCTTCCAGTTGCggg                     >  1:59460/1‑143 (MQ=255)                                                                                                        cGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCGTGGGTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCa                   >  1:431305/1‑143 (MQ=255)                                                                                                        cGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCGTGGGTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCa                   >  1:489593/1‑143 (MQ=255)                                                                                                             gAACCACACCAGCCCGTAGGGTGTGGTGTGAGGATAAATCGCAACGATGGCGCAAAACAGCATGTCGTGGGTGCCGGCGCTCACCACCTGGCGGACACGGCAGCCAAACGAAACCACAGCCCCTCCCAGTTCCGGCCACCCgg              >  2:94562/1‑143 (MQ=255)                                                                                                               aCCACACCAGCCCGTAGGGTGtggtgtggttcgatcgcagttatcacgcgctgatgcgccctgcttgttaacctccttaaggagacagctgatggcaatgttcggttttcctcactggcagttaaaatcgacctctacagagc            <  2:614183‑M2/143‑123 (MQ=255)                                                                                                               aCCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCGTGGGTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGTc            <  1:266504/143‑1 (MQ=255)                                                                                                                 cacaCCAGCCCGTAGGGTGtggtgtggttcgatcgcagttatcacgcgctgatgcgccctgcttgttaacctccttaaggagacagctgatggcaatgttcggttttcctcactggcagttaaaatcgacctctacagagagc          <  2:483273‑M2/143‑125 (MQ=255)                                                                                                                 cacaCCAGCCCGTAGGGTGtggtgtggttcgatcgcagttatcacgcgctgatgcgccctgcttgttaacctccttaaggagacagctgatggca                                                          <  2:598978‑M2/95‑77 (MQ=255)                                                                                                                 cacaCCAGCCCGTAGGGTGtggtgtggttcgatcgcagttatcacgcgctgatgcgccctgcttgttaacctccttaaggagacagctgatggca                                                          >  1:598978‑M2/1‑19 (MQ=255)                                                                                                                     ccAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCGTGGGTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTGCCAGTTGCGGGCATCCGGGCAccccc      >  2:200427/1‑143 (MQ=255)                                                                                                                         cccGGAGGGTGTGGCGTGACGATGAACCGCTTCGATGGCGCAAAACAGAAGGTCGTGGGTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCt  <  1:59270/143‑1 (MQ=255)                                                                                                                                   |                                                                                                                                     CTGTAGAGGTCGATTTTAACTGCCAGTGAGGAAAACCGAACATTGCCATCAGCTGTCTCCTTAAGGAGGTTAACAAGCAGGGCGCATCAGCGCGTGATAACTGCGATCGAACCACACCAGCCCGTAGGGTGTGGTGTGACGATGAATCGCTTCGATGGCGCAAAACAGAATGTCGTGGGTGCCGACGCTCACCACCTGGCTGATACGGCAGTCAAACGAAACCAGAGCCTCTTCCAGTTGCGGGCATCCGGTCACCCCCGTCT  >  NC_000913/1069791‑1070053

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.