New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3498808 =	47 (1.180)	4 (0.100)	3/254	NT	9.0%	coding (981/1374 nt)	cysG	siroheme synthase
	?	NC_000913	3498902 =	36 (0.940)					coding (1075/1374 nt)	cysG	siroheme synthase

CGAAGAGCTGGAAACACTGTGCAACGCGGGTATTCCGTTCTCGGTGGTTCCGGGTATTACCGCAGCTTCTGGTTGCTCTGCCTATTCGGGTATTCCACTCACGCATCGCGATTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCTGGCGGCAGAAAAACAGACGCTGGTGTTCTATATGGGGTTGAATCAGGCCGCGACTATTCAGCAAAAGCTGATTGAACACGGAATGCCAGGCGAAATGCCGGTGG  >  NC_000913/3498760‑3499043                                                                                                                                               |                                                                                                                                               cGAAGAGCCGCAAACACTGCGCACCGCGGGTATCCCGTTCTCGGTGGTTCCGGGTATTACCGCAGCTTCTGGTTGCTCTGCCTATTCGGGTATTCCACTCACGCATCGCGATTATGCCCAGAGCGTACGCTTAATTACCGGac                                                                                                                                                <  1:136050/143‑1 (MQ=255)  gAAGAGCTGGAAACACTGTGCAACGCGGGTATTCCGTTCTCGGTGGTTGCGGGAACTATAACAAATACTGGTTGCTCTGCCTATTCGGGTATTCCACTCACGCATCGCGATTCTGCCCAGAGCGTACGCTTAATTACCGGcca                                                                                                                                               >  2:8549/1‑143 (MQ=255)   aaGAGCTGGAAACACTGTGCAACGCGGGTATTCCGTTCTCGGTGGTTCCGGGCATTACCGCAGATTGGGGGTGCTCTGCCTATTCGGGTATTCCACTCACGCATCGCGATTATGCCCAGAGCGTACGCTTAATTACCGGacac                                                                                                                                              <  1:364025/143‑1 (MQ=255)    agagCTGGAAACACTGTGCAACGCGGGTATTCCGTTCTCGGTGGTCGCGGGTACAACCGAAACATCTGCTTGCTCTGCCTCTTCGGGTATTCCACTCACGCATCGCGATTACGCCCAGAGCGTACGCCTAATTACCGGACACt                                                                                                                                             >  2:140172/1‑143 (MQ=255)         tcaggttttcccagtccagctcgccaccggtttttaagtgtccggtaattaagcgtacgctctgggcataatcgcgatgcgtgagtggaatacccgaataggcagagcaaccagaagctgcggtaatacccggaCACTTa                                                                                                                                           <  2:324018‑M2/6‑1 (MQ=255)         tcaggttttcccagtccagctcgccaccggtttttaagtgtccggtaattaagcgtacgctctgggcataatcgcgatgcgtgagtggaatacccgaataggcagagcaaccagaagatgcggtaagacccggaCACTTa                                                                                                                                           >  1:324018‑M2/135‑140 (MQ=255)            aaaCACTGTGCAACGCGGGTATTCCGTTCTCGGTGGTTCCGGGTATTACCGCAGCTTCTGGTTGCTCTGCCTATTCGGGTATTCCACTCACGCATCGCGATTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAAcc                                                                                                                                     <  1:512870/143‑1 (MQ=255)                  tgtgCAACGCGGGTATTCCGTTCTCGGTGGTCGCCGGGACATCCACAACAAAAGGTTGCTCCGCCTATTCGAGTCTTCCACTCACGAATCACGATTATGACAACAGCGGACACCTAATTACCGGGCACTTAAAAACCGCTG‑Gc                                                                                                                              >  2:434254/1‑143 (MQ=255)                     gCAACGCGGGTCTTCCGTTCTCGGTGGTTGCGGGAACAACCGCAGCAACTGGTTGCTCTGCCTATTCGGGCCTTCCCCTCACGCATCACGCTCATGCCCAGCGCGTCCGCTTACTTACCGGACACGTCAAAACCGGTA‑Gccgg                                                                                                                           >  2:353948/1‑140 (MQ=255)                       aaCGCGGGTAGTCCGTTGTCGGTGGTTCCGGGTATTACCGCAGCTTCTGGTTGCTCTGCCTATTCGGGTATTCCACCCACGCAGCGCGATTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCt                                                                                                                         <  2:142860/143‑1 (MQ=255)                          gcgGGTATTCCGTTCTCGGTGGTTCCGGGTACTCCCGCAGCTTCTGGTTGCTCTGCCTATTCGGGTATTCCACTCACGCATCGCGATTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGa                                                                                                                      <  1:212263/143‑1 (MQ=255)                               tagcccGTTCTGGGTCGATGGGGGGAGTACCGGAGCCCCTGGGTGCGCTGCCTATTCGGGTATTCCACTCGCGCGGCGCGATGGTGCCGAGAGCGTACGCTTAAGTACCGGACACGAAAAGACCGGTG‑GCGAGCGGGACTggg                                                                                                                 <  2:605542/139‑1 (MQ=255)                                 ttCCGTTCTCGGTGGTTCCGGGTATTACCGCAGCGTCTGGTTGCTCTGCCTATTCGGGTATTCCACTCACGCATCGCGATTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGACTGGGaa                                                                                                               <  1:310313/143‑1 (MQ=255)                                   ccgggcgcGGTGGTGCCGGGTAGGACCGCAGCGTCTGGTTGCTCTGCCTATTCGGGTATGCCACTCACGCGTCGCGATTATGCCCAGAGCGTACGCTTAATTACCGGAGACTTAAAAACCGGTG‑GCGAGCTGGACTGGGaaaa                                                                                                             <  1:197599/136‑1 (MQ=255)                                   ccGTTCTCGGTGGTTCCGGGTATTACCGCAGCTTCTGGTTGCTCTGCCTATTCGGGTATTCCACTCACGCATCGCGATTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGACTGGGaaaa                                                                                                             >  1:717969/1‑143 (MQ=255)                                        ctcGGTGGTGGCGCGTATTGCCGCAGCTGCTGGGTGCCCTGCCTGGGCGGGGCTTCCACGCACGCACCGCGTGTAGGCCCAGGGCGTACGCTTAATTACCGGACACTGAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCTgg                                                                                                        <  2:611282/143‑1 (MQ=255)                                         tcGGTGGTTCCGGGTATTACCGCAGCTTCTGGTTGCTCTGCCTATTCGGGTATTCCACTCACGCATCGCGCTTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCTggc                                                                                                       >  1:554880/1‑143 (MQ=255)                                           taagtgTCCGGGTCTTACCGCATCTTCTGGTTGCTCTGCCTATTCGGGTATTCCACTCACGCATCGCGATTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCtga                                                                                                        >  1:324018‑M1/7‑139 (MQ=255)                                           taagtgTCCGGGTATTACCGCAGCTTCTGGTTGCTCTGCCTATTCGGGTATTCCACTCACGCATCGCGATTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCtga                                                                                                        <  2:324018‑M1/134‑2 (MQ=255)                                                           aCCGCAGCTTCTGGTTGCTCTGCCTATTCGGGTATTCCACTCACGCATCGCGACTATGCCCAGCGCGTCCGCCTCACTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGACTGCGAAAACCTGGCGGCAGCAAACCAGACGcc                                                                                     >  2:93791/1‑142 (MQ=255)                                                            agcgtacgctctgggcataatcgcgatgcgtgagtggaatacccgaataggcagagcaaccagaagctgcggtaatacccggaCACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCTGGCGGCAGAAAAACAGACGCTg                                                                                    >  1:366706‑M2/84‑143 (MQ=255)                                                                    tCTGGTTGCCCTGCCTATGCGGGTATTCCACTCACGCATCGCGCTGATGCCCAGAGCGTACGCTTAAGTGCCGGACACTTAAAAACCGGTG‑GCGAGCTGGTCTGGGAAAACCTGGCGGCAGAAAAACAGACGCTGGTGTTCta                                                                            <  2:531656/143‑1 (MQ=255)                                                                         ttGCTCTGCCTATTCGGGTATTCCACTCACGCATCGCGATTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCTGGCGGCAGAAAAACAGACGCTGGTGGTCTACATgg                                                                       >  2:502310/1‑143 (MQ=255)                                                                          tGCTCTGCCTATTCGGGTATTCCACTCACGCATCGCGATTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGAGTGGGAGAACCTGGCGGCAGAAAAACAGAAGCGGGTGTCCTATATggg                                                                      >  1:682709/1‑143 (MQ=255)                                                                           gCTCTGCCTATTCGGGTATTCCACTCACGCATCGCGATTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCTGGCGGCCCAAAAACAGACGCTGGGGTACGATATgggg                                                                     >  1:120099/1‑143 (MQ=255)                                                                             tctGCCTATTCGGGTATTCCACTCACGCATCGCGATTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCTGGCGGCAGAAAACCAGACGCTGGTGTTCTATATGGGGtt                                                                   >  1:311784/1‑143 (MQ=255)                                                                               tGCCTATTCGGGTATTCCACTCACGCATCGCGATTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCTGGCGGCAGAAAAACAGACGCTGGTGTTCTATATGGGGGTGa                                                                 >  1:349125/1‑143 (MQ=255)                                                                                  gcaTTCGGGCATTCCACTCACGCATCGCGATTATGCCCAGAGAGTACGCTTAATTAACGGACACTGAAAGGCCGGTG‑GCGAGCGGGACTGGGAATACCTGGCGGCAGAAAAACAGACGCTGGTGTTCTATATGGGGTTGAATc                                                              <  2:597549/141‑1 (MQ=255)                                                                                  cTATTCGGGTATTCCACTCACGCATCGCGATTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCTGGCGGCAGAAAAACAGACGCTGGTGTTCTATATGGGGTTGAATc                                                              <  1:344584/143‑1 (MQ=255)                                                                                     ttCGGGTATTCCACTCACGCATCGCGATTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCTGGCGGCAGAAAAACAGACGCTGGTGTTCTATATGGGGTTGAATCAgg                                                           <  1:99974/143‑1 (MQ=255)                                                                                         ggTATTCCACTCACGCAGCGCGATTATGCCCAGAGGGGACGCTTAAGTACCGGACACTT‑AAACCAGCTCAACAATCTGCAAACGGTGGTGATATTGGTATAAAAACAGACGCTGGTGTTCTATATGGGGTTGAATCAGGCcgc                                                       <  1:785055/143‑1 (MQ=255)                                                                                           tATTCCACTCACGCATCGCGATTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCTGGCGGCAGAAAAACAGACGCTGGTGTTCTATATGGGGTTGAATCAGGCCGCGa                                                     <  1:11661/143‑1 (MQ=255)                                                                                           tATTCCACTCACGCATCGCGATTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCTGGCGGCAGAAAAACAGACGCTGGTGTTCTATATGGGGTTGAATCAGGCCGCGa                                                     >  2:522621/1‑143 (MQ=255)                                                                                                cACTCACGCATCGCGATTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCTGGCGGCAGAAAAACAGACGCTGGTGTTCTATATGGGGTTGAATCAGGCCGCGACTAtt                                                >  1:151104/1‑143 (MQ=255)                                                                                                       gCATCGCGATTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCTGGCGGCAGAAAAACAGACGCTGGTGTTCTATATGGGGTTGAATCAGGCCGCGACTATTCAGCaaa                                         >  1:725325/1‑143 (MQ=255)                                                                                                        gaataggcagagcaaccagaagctgcggtaatacccggaCACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCTGGCGGCAGAAAAACAGACGCTGGTGTTCTATATGGGGTTGAATCAGGCCGCGACTATTCAGCaaaa                                        <  2:366706‑M2/104‑1 (MQ=255)                                                                                                         aTCGCCAGTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACGTGGCGGCAGAAAAACAGACGCTGGTGTTCTATATGGGGTTGAATCAGGCCGCGACTATTCAGCAAAAg                                       <  2:188073/143‑1 (MQ=255)                                                                                                          tCGCGATTATGCCCAGAGCGTACGCTTAATTACCGGACACTTTAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCTGGCGGCAGAAAAACAGACGCTGGTGTTCTATATGGGGTTGAATCAGGCCGCGACTATTCAGCAAAAGc                                      >  2:363587/1‑143 (MQ=255)                                                                                                          tCGCGATTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCTGGCGGCAGAAAAACAGACGCTGGTGTTCTATATGGGGTTGAATCAGGCCGCGACTATTCAGCAAAAGc                                      >  2:784888/1‑143 (MQ=255)                                                                                                           ggcgATTATGCCCAGAGCGGAGGCTAAATTACCGGACAGTTAGGAGCCGGTG‑GCGAGCTGGACTGGGAAAACCTGGCGGCAGGAAAACAGACGCTGGTGTTCTAGATGGGGTTGAATCAGGCCGCGACTATTCAGCAAAAGCt                                     <  2:619887/142‑1 (MQ=255)                                                                                                           cgccATTATGCCCCGAGCGTCCGCGTCATTCCCGGCCACTTAAAAACCCGTG‑GCGAGCTGGACTGGGAAAACCTGGCGGCAGAAAAACAGACGCTGGTGTTCTATATGGGGTTGAATCAGGCCGCGACTATTCAGCAAAAGCt                                     <  1:93791/143‑1 (MQ=255)                                                                                                             cgATTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCTGGCGGCAGTAAAACAGACGCTGGGGTTCTATACGGGGTTGAATCAGGCAGCGACTATTCCGCAAAACCTGa                                   >  2:127547/1‑143 (MQ=255)                                                                                                             cgATTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCTGGCGGCAGAAAAACAGACGCTGGTGTTCTATATGGGGTTGAGTCAGGCCGCGACTATTCAGCAAAAGCTGa                                   >  1:206382/1‑143 (MQ=255)                                                                                                             cgATTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCTGGCGGCAGAAAAACAGACGCTGGTGGTCTATATGGGGTGGAATCGGGCCGCGACTATTCAGCAAAAGCTGa                                   >  2:584261/1‑143 (MQ=255)                                                                                                              acacctccccAGAGCCCATGCATAATTACCGGACCCTCAAACGCGGGTC‑GCGAGGTGGGCTGGGAACGCCGGGCGGCAGAAAGGCAGCCGCTGGTGTTTTATATGGGGTTGTATCAGGCCGCGACTATTCAGCAAAAGCTGAt                                  <  2:328450/136‑1 (MQ=255)                                                                                                                             gTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCTGGCGGCAGAAAAACAGACGCTGGTGTTCTATATGGGGTTGCATCAGGCCGCGACTATTCAGCAAAAGCTGATTGAACACGGCATGcc                   >  1:352484/1‑143 (MQ=255)                                                                                                                                     aaTCACCGCACACTTAAAACCCGGTG‑CCGAACTGGACTGGCAAAACCTGGCGGCAGAAAAACAGACGCTGGTGTTCTATATGGGGTTGAATCAGGCCGCGACTATTCAGCAAAAGCTGATTGAACACGGAATGCCAGGCGaaa           <  1:248007/143‑1 (MQ=255)                                                                                                                                           cggaCACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCTGGCGGCAGAAAAACAGACGCTGGTGTTCTATATGGGGTTGAATCAGGCCGCGACTATTCAGCAAAAGCTGATTGAACACGGAATGCGAGGCAAAGTGCCgg     >  2:487293‑M2/5‑143 (MQ=255)                                                                                                                                           cggaCACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCTGGCGGCAGAAAAACAGACGCTGGTGTTCTATATGGGGTTGAATCAGGCCGCGACTATTCAGCAAAAGCTGATTGAACACGGAATGCCAGGCGAAATGCCgg     >  1:605688‑M2/5‑143 (MQ=255)                                                                                                                                             gaCACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCTGGCGGCAGAAAAACAGACGCTGGTGTTCTATAAGAGGTTGAATCAGGCCGCGACTATTCAGCAAACGCTGATTGACCACGGAATGCCAGGCGAAATGCCGGTg   >  1:295053‑M2/3‑143 (MQ=255)                                                                                                                                              aCACGTAAAAACCGGTG‑GCGAGCTGGACTGGGAAATCCCGGCGGCAGAAAAACAGACGCTGGTGTTCTATATGGGGTTGAATCAGGCCGCGACTATTCAGCAAAAGCTGATTGAACACGGAATGCCAGGCGAAATGCCGGTgg  <  1:743177‑M2/142‑1 (MQ=255)                                                                                                                                               |                                                                                                                                               CGAAGAGCTGGAAACACTGTGCAACGCGGGTATTCCGTTCTCGGTGGTTCCGGGTATTACCGCAGCTTCTGGTTGCTCTGCCTATTCGGGTATTCCACTCACGCATCGCGATTATGCCCAGAGCGTACGCTTAATTACCGGACACTTAAAAACCGGTG‑GCGAGCTGGACTGGGAAAACCTGGCGGCAGAAAAACAGACGCTGGTGTTCTATATGGGGTTGAATCAGGCCGCGACTATTCAGCAAAAGCTGATTGAACACGGAATGCCAGGCGAAATGCCGGTGG  >  NC_000913/3498760‑3499043

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.