New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4338123	35 (0.850)	3 (0.080)	3/252	NT	7.9%	intergenic (‑194/+131)	adiY/adiA	DNA‑binding transcriptional activator AdiY/arginine decarboxylase, degradative
	?	NC_000913	= 4338130	37 (0.950)					intergenic (‑201/+124)	adiY/adiA	DNA‑binding transcriptional activator AdiY/arginine decarboxylase, degradative

AGCGATACCGGGAAATGGTTATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4337977‑4338123 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcggCCCCACCCCGCG‑CTTTTTTTTGCCTGTTATTTATCCTGTAAAAAAATATGTACATGAGAAATTACTATAAAAATTTGTACTATTAGTAAAACTCGTTATTTTTATGCATGTTTATATTCATCATACAATTATATAACCA  <  NC_000913/4338130‑4337992                                                                                                                                                                                                                                                                                                 AGCGATACCGGGAAATGGTTATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAGC                                                                                                                                                  >  2:643038/1‑143                    TATATAATTGTATGATGAATATAAACATGCATAATAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAGCGCGGCCCCACCCCGCG‑CTT                                                                                                                              <  1:698806/143‑1                                                             GAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAGCGCGGCCCCACCCCGCG‑CTTTTTTTTGCCTGTT                                                                                                                 >  1:89807/1‑115                                                             GAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAGCGCGGCCCCACCCCGCG‑CTTTTTTTTGCCTGTT                                                                                                                 <  2:89807/115‑1                                                                                                                                              GCGCTGCCCCTCCCCTCGTTTTTTTTTTGCCTGTTATTTATCCTGTAAAAAAATATGGACATGAGAAATTACTATAAAAATTTGTACTATTAGTAAAACTCGTTATTTTTATGCTTGTTTATATTCATCATACAATTATATAA     <  1:172321/143‑1                                                                                                                                               agtGGCTCCACGCCGCA‑CTGTTTGTCGCCTGTGATTTATATTGTAAAAAAATATGTACATGAGAAATTACTATAAAAATTTGTACTATTAGTAAAACTCGTTATTTTTATGCATGTTTATATTCATCATACAATTATATAACC   <  2:803336/140‑1                                                                                                                                               CGCAGCCCCACCCCGCG‑GTTTTTTTTGCCTGTTAATAAAAAAGAAAAAAAATATGTACATGAGAAATTACTATAAAAATTTGTACTATTAGTAAAACTCGTTATTTTTATGCATGTTTATATTCATCATACAATTATATAACC   <  2:553015/143‑1                                                                                                                                                GCGGCCCCACCCCGCG‑CTTTTTTTTTCCTTTTATTTATCCTGTAAAAAAATATGTACATGAGAAATTACTATAATAATTTGTACTATTAGTAAAACTCGTTATTTTTATGCATGTTTATATTCTTCATACAATTATATAACCA  >  2:593653/1‑143                                                                                                                                                                                                                                                                                                 AGCGATACCGGGAAATGGTTATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4337977‑4338123 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcggCCCCACCCCGCG‑CTTTTTTTTGCCTGTTATTTATCCTGTAAAAAAATATGTACATGAGAAATTACTATAAAAATTTGTACTATTAGTAAAACTCGTTATTTTTATGCATGTTTATATTCATCATACAATTATATAACCA  <  NC_000913/4338130‑4337992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.