New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4338123	35 (0.850)	3 (0.080)	3/252	NT	7.9%	intergenic (‑194/+131)	adiY/adiA	DNA‑binding transcriptional activator AdiY/arginine decarboxylase, degradative
	?	NC_000913	= 4338130	37 (0.950)					intergenic (‑201/+124)	adiY/adiA	DNA‑binding transcriptional activator AdiY/arginine decarboxylase, degradative

TGGTTATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCA  >  NC_000913/4337992‑4338264                                                                                                                                             |                                                                                                                                       tGGTTATATAATTGTATGAAGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTATTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAAAAGGAAAAAAAAAG‑C‑GCGGGGTGGGGccgc                                                                                                                                    >  2:593653‑M2/1‑139 (MQ=255)  ggTTATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTTCTTTTTTATTAACAGGCAAAAAAAAC‑C‑GCGGGGTGGGGctgcg                                                                                                                                   <  2:553015‑M2/143‑6 (MQ=255)  ggTTATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAATATAAATCACAGGCGACAAACAG‑T‑GCGGCGTGGAGccact                                                                                                                                   <  2:803336‑M2/143‑6 (MQ=255)    ttATATAATTGTATGATGAATATAAACAAGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTCCATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAAAC‑GAGGGGAGGGGcagcgc                                                                                                                                  <  1:172321‑M2/143‑7 (MQ=255)          aaTTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAGGt                                                                                                                           <  1:807066/143‑1 (MQ=255)                  gatgaATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACAtt                                                                                                                   >  2:57210/1‑143 (MQ=255)                       atatAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTtttgt                                                                                                              >  2:559886/1‑143 (MQ=255)                            aaCATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTgca                                                                                                         <  1:687519/143‑1 (MQ=255)                             aCAAGCGTAAAACTGAGGAGTTGTACTGATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTgcag                                                                                                        <  2:262305/143‑1 (MQ=255)                                tGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAATAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGAAGCaa                                                                                                     >  1:804788/1‑143 (MQ=255)                                  cATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAAtt                                                                                                   >  2:177627/1‑143 (MQ=255)                                    tAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAAGGATGACATTATTGTTTGCAGCAAtttt                                                                                                 >  1:470736/1‑143 (MQ=255)                                       aaaTCACGAGTTTTACTAATAGTATAAATTTTTATAGTAATTTCGCATGTACATATTTTTTTACAGGAGAAATAACAGGCAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTAt                                                                                              <  1:70965/143‑1 (MQ=255)                                                 ttttACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAACAAGTATGCCATTTTTGTTTGCAGCAATTTTTATGAAAACGTTg                                                                                    >  1:602174/1‑143 (MQ=255)                                                    tACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCa                                                                                 <  1:643038/143‑1 (MQ=255)                                                         aTAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAG‑C‑GCGGGGTGGGGGCGAGAAAACGGTAGGACATGTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCGTACTc                                                                            >  1:763625/1‑143 (MQ=255)                                                          tAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCCATTTTTATGAAAACGTTGCCATACTCa                                                                           >  1:608489/1‑143 (MQ=255)                                                               cAAATTTTTATAGTAATTGCTCATGTACATATTTTGTTACAGGATAAATAACAGGCAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAgg                                                                      <  2:407494/143‑1 (MQ=255)                                                                aaaTTTTTATAGAAATTTCGCATGTACACATTTTTTTACAGTATAAATAACAGGCAAAAAAAAG‑C‑GCTGGGTGGGGCCGCCCAAAAATTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGc                                                                     <  1:33385/143‑1 (MQ=255)                                                                      gtataGTAATCTCTCATGTAGAAATGTTTTTAATGGATAAATAACAGGTAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAgg                                                               <  2:665435/142‑1 (MQ=255)                                                                          aGTAATTTCTCAGGTACATATTTTTGTACAGGATAAATAACAGGCAAAAAAAGG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAg                                                           <  1:457889/143‑1 (MQ=255)                                                                            tAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggc                                                         >  1:193722/1‑143 (MQ=255)                                                                              aattCTCAGATGCATAGGTTTGTAGAGGATAAATAAGAGGCAAAAAAAAG‑C‑GCGGGGTGGGGCGGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcgg                                                       <  2:778832/141‑1 (MQ=255)                                                                              aTTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAggcgg                                                       >  1:531437/1‑143 (MQ=255)                                                                                        tACATATGTTTTTACAGGATAAAAAAAAAAAAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTa                                             <  2:564720/143‑1 (MQ=255)                                                                                           atatTTTTTTACAGGATAAATAACAGGCACAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAATTATGACATTTTTGTTTGCAGCAATTTTTATGAACACGTTGCCATACTAAAAAGCCCTAAGGCCCGGCGGCGTAACGttgtct                                          >  2:587947/1‑139 (MQ=255)                                                                                           atatTTTTTTACAGGATAAATAACAGGCAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTAttt                                          >  1:659915/1‑143 (MQ=255)                                                                                            tgtttttttACAGGATAAATAACAGGCAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTa                                         <  1:334193/141‑1 (MQ=255)                                                                                            tatTCTTTTACAGTATAAAAAACAGGAAAAAAAAAA‑CGGCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTAttt                                          <  1:73079/143‑1 (MQ=255)                                                                                             ttttttgaACAGAAAAAAAAAAAGCCAAAAAAAAG‑C‑GCGGGTGGGCGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTaa                                        <  1:665035/142‑1 (MQ=255)                                                                                             atTTTTTTACAGGATAAATAACAGGCAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTaa                                        <  1:627412/143‑1 (MQ=255)                                                                                              tttttttACAGGATAAATAACAGGCAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTaaa                                       <  1:38373/143‑1 (MQ=255)                                                                                              tttttttACAGGACAAATAACAGGCAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCACTTTTTATGTACACGTTGCCCTACTCACATGGCCTAAGGCCAGGCGGCGTAATGTTATTTaaa                                       <  1:15390/143‑1 (MQ=255)                                                                                              tttttttACAGAATAAATAACAGGCAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTaaa                                       <  1:410976/143‑1 (MQ=255)                                                                                                       aGGATAAATAACAGGCAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTAGTTAAACAATTACga                              >  1:438245/1‑142 (MQ=255)                                                                                                                aaCAGGCAAAAAAAAG‑C‑GCGGGGTGGGGccgcgcttttttttgcctgttatttatcctgtaaaaaaatatgtacatgagaaattactataaaaatttgtactattagtaaaactc                                                 >  1:89807‑M2/1‑28 (MQ=255)                                                                                                                aaCAGGCAAAAAAAAG‑C‑GCGGGGTGGGGccgcgcttttttttgcctgttatttatcctgtaaaaaaatatgtacatgagaaattactataaaaatttgtactattagtaaaactc                                                 <  2:89807‑M2/115‑88 (MQ=255)                                                                                                                     gCAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAg                >  2:512507/1‑143 (MQ=255)                                                                                                                       aaaaaaaaG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTg              <  1:57210/143‑1 (MQ=255)                                                                                                                        aaaaaaaG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAACGGCCTAAGGCCACGCGGCGCAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTgg             >  1:586530/1‑143 (MQ=255)                                                                                                                             aaG‑C‑GCGGGGTGGGGccgcgcttttttttgcctgttatttatcctgtaaaaaaatatgtacatgagaaattactataaaaatttgtactattagtaaaactcgttattattatgcatgtttatattcatcatacaattatata        <  1:698806‑M2/143‑129 (MQ=255)                                                                                                                              aG‑C‑GCGGGATGGAGCCGCGCAAAAAGTATAACATTTATGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGc       <  1:62783/143‑1 (MQ=255)                                                                                                                                     gggtTGGGGCCGCGAAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAGAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCa  <  2:631196/143‑1 (MQ=255)                                                                                                                                     ggggTGGGGCCGCGGAAAAAGTAGGGCATTTTTGCTTACAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCa  <  2:780179/143‑1 (MQ=255)                                                                                                                                             |                                                                                                                                       TGGTTATATAATTGTATGATGAATATAAACATGCATAAAAATAACGAGTTTTACTAATAGTACAAATTTTTATAGTAATTTCTCATGTACATATTTTTTTACAGGATAAATAACAGGCAAAAAAAAG‑C‑GCGGGGTGGGGCCGCGCAAAAAGTATGACATTTTTGTTTGCAGCAATTTTTATGAAAACGTTGCCATACTCAAAAGGCCTAAGGCCAGGCGGCGTAATGTTATTTAAACAATTACGCCTTCAGCGGAATAGTGGTTACGCTTTCA  >  NC_000913/4337992‑4338264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.