New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	882488 =	38 (0.930)	3 (0.080)	3/254	NT	7.4%	coding (247/759 nt)	deoR	DNA‑binding transcriptional repressor DeoR
	?	NC_000913	882517 =	38 (0.960)					coding (218/759 nt)	deoR	DNA‑binding transcriptional repressor DeoR

GCCAGAAAGGTATTTAGCGAATAACAAACGGCGGTAAAAGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATC  >  NC_000913/882349‑882624                                                                                                                                            |                                                                                                                                         gcCAGAAAGGTATTTAGCGAATAACAAACGGCGGTAAAAGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTgccgc                                                                                                                                       <  2:48529/143‑1 (MQ=255)  cgccgccctgcttggggtttcggagatgacgattcgtcgcgatctgaacaaccacagtgcgcccgtcgttttgctcggcggctatattgttctggaaccgcgcagtgccagccattacctgttaagcgatcaaacatcacgcc                                                                                                                                      <  2:150771‑M1/5‑1 (MQ=255)                         cAAACGGCGGTAAAAGGGATTTCATTATCAACCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGCTTTGCCGCCCGTCGTTTTTCTTCCACCAGGCg                                                                                                               <  1:509802/143‑1 (MQ=255)                          aaaCGGCGGTAAAAGGGATTTCATTATCAATCGCTTTAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCCGCGTCGCAGCCCGTTTTGCCGCCCGGCGCTTTCCGTCCACCAGGCgg                                                                                                              >  1:528944/1‑143 (MQ=255)                           aaCGGCGGTAAAAGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCAAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCggg                                                                                                             >  2:7195/1‑143 (MQ=255)                               gcggTAAAAGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGACACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCTGGAttt                                                                                                         >  1:651674/1‑143 (MQ=255)                                tattcagaGGGATGTCATTATCAATCGCTTCACTAATCCACGGCGTGGTGGTCCCACAGTCAACAAAGAGGGTCTGATCGGGGTCTACCAGCGTCGCAGCCGGTTTTGCCGCCCGGCGCGTGTCTGCCCCCAGGCGGGGtttt                                                                                                        >  2:359825/8‑143 (MQ=255)                                gattcgtcgcgatcggaacaaccacagtgcgcccgtcgttttgctcggcggctatattgttctggaaccgcgcagtgccagccattacctgttaagcgatcaaaaatcCCGCCCGGCGTTTTTCTTCCACCAGGCGGGAtttt                                                                                                        >  2:689382‑M1/109‑143 (MQ=255)                                cggTAAAAGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGAGGTCGGTCGAGCGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGAtttt                                                                                                        <  1:799058/143‑1 (MQ=255)                                             ttCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACa                                                                                           <  2:46122/143‑1 (MQ=255)                                               cATTATCAATCGCTTCAATAATCCACGGCGTGGCGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTTTACCGGGGTCGCAGCCAGTTGTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAgg                                                                                         <  1:360439/143‑1 (MQ=255)                                                 ttATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGGTTTTCTTCCACCAGGCGGGATTTTTGATCGCTCAACAGGtc                                                                                       >  1:776363/1‑142 (MQ=255)                                                    tCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAAtg                                                                                    >  1:480490/1‑143 (MQ=255)                                                           cgtCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCa                                                                             <  1:803125/141‑1 (MQ=255)                                                            ttCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTCACAGGTAATGGCTGGCAc                                                                            >  1:451521/1‑143 (MQ=255)                                                            ttCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCGTAACAGGTAATGGCTGGCAc                                                                            >  2:465112/1‑143 (MQ=255)                                                                  aatCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGcgcg                                                                      <  1:784232/143‑1 (MQ=255)                                                                    tCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGt                                                                    >  2:410558/1‑143 (MQ=255)                                                                        cGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCGGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTACTGCCTGGCACTGCGCGGTTCCa                                                                >  2:642717/1‑143 (MQ=255)                                                                              ggtggtgCCGCAGTCAAGAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGGCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACaa                                                          <  2:778258/143‑1 (MQ=255)                                                                              ggtggtgCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACaa                                                          <  1:788301/143‑1 (MQ=255)                                                                                   tgCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAg                                                     <  1:787603/143‑1 (MQ=255)                                                                                            cgaaaaaGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGc                                            <  2:640749/141‑1 (MQ=255)                                                                                             aaaaaaGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCAGAGCa                                           >  1:346892/1‑143 (MQ=255)                                                                                             aaaaaaGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGCCCGGATTTTTGATCGCTTAACATCTCATGGCTGGCACTGCGCGGTTCCAGACCACTATCcccgcctcgca                                           >  1:79703/1‑138 (MQ=255)                                                                                             aaaaaaGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCACGGCGTTTTTCTTCCACCCGGCGGGATTGTTGGTCGCTTAACAGGTACAGGCTGGCAATGCGCGGTGCAAGAACAATAACGccgacggcga                                           >  2:142692/1‑139 (MQ=255)                                                                                             aaaaaaGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCACGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGGTCTGCGCGGTGCCAGGACAATATGGCGGCGGAGcg                                           >  1:334267/1‑142 (MQ=255)                                                                                                          tGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATGTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGGTCCAGAACAATATAGCCGCCGAGCAACGCGACGGgcgc                              >  2:544106/1‑143 (MQ=255)                                                                                                           gATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGCTCGCTTACCAGGTAATGGCCGGCACTGCGCCGCTCCAGCCCAATCTAGCCGCCGAGCAAAACGCCGGGCGCa                             >  2:164888/1‑143 (MQ=255)                                                                                                           gATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCa                             >  2:469648/1‑143 (MQ=255)                                                                                                            aTCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCAc                            >  1:714184/1‑143 (MQ=255)                                                                                                                ggTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCCCTGCGCGGTTCCAGAACAATCTGGCCGCCGAGCAAAACGACGGGCGCACtgtg                        >  2:144446/1‑143 (MQ=255)                                                                                                                 gTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTgg                       <  2:714660/143‑1 (MQ=255)                                                                                                                  cattacctgttaagcgatcaaaaatcCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAAtg                                                                                    <  2:471338‑M1/55‑1 (MQ=255)                                                                                                                  cattacctgttaagcgatcaaaaatcCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAAtg                                                                                    >  1:471338‑M1/27‑81 (MQ=255)                                                                                                                   tCTACCAGCCGCGCAGCCAGTTTTGCCGCCCGGCGTTGTTCTTCCGCCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCCCTGGGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGgtt                     <  2:115281/143‑1 (MQ=255)                                                                                                                       ccATCGTCGCCTCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCATGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTc                 <  1:742151/143‑1 (MQ=255)                                                                                                                          gCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGa              <  1:7195/143‑1 (MQ=255)                                                                                                                           cGTCGCAGCTAGTTTTGCCGCCCGGCTTTTTTCTTCCACCAGGCGGGATGTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGAt             <  2:651674/143‑1 (MQ=255)                                                                                                                               gCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGGACAATGTAGCCGCCGAGCCAACCGCCGGGCGCGCCTCGGCTGCTCCGATcgcg         >  1:703311/1‑143 (MQ=255)                                                                                                                                cAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGAGAATTAGGGTTGTTCAGATCGcga        >  2:126692/1‑143 (MQ=255)                                                                                                                                   ccAGTGCTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGcgacga     <  2:607358/143‑1 (MQ=255)                                                                                                                                      gTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATc  <  1:465112/143‑1 (MQ=255)                                                                                                                                            |                                                                                                                                         GCCAGAAAGGTATTTAGCGAATAACAAACGGCGGTAAAAGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATC  >  NC_000913/882349‑882624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.