| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 882488 = | 38 (0.930) | 3 (0.080) | 3/254 | NT | 7.4% | coding (247/759 nt) | deoR | DNA‑binding transcriptional repressor DeoR |
| ? | NC_000913 | 882517 = | 38 (0.960) | coding (218/759 nt) | deoR | DNA‑binding transcriptional repressor DeoR | |||||
AACGGCGGTAAAAGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGGGCGGCG > NC_000913/882375‑882654 | aaCGGCGGTAAAAGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCAAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCggg > 2:7195/1‑143 (MQ=255) gcggTAAAAGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGACACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCTGGAttt > 1:651674/1‑143 (MQ=255) tattcagaGGGATGTCATTATCAATCGCTTCACTAATCCACGGCGTGGTGGTCCCACAGTCAACAAAGAGGGTCTGATCGGGGTCTACCAGCGTCGCAGCCGGTTTTGCCGCCCGGCGCGTGTCTGCCCCCAGGCGGGGtttt > 2:359825/8‑143 (MQ=255) gattcgtcgcgatcggaacaaccacagtgcgcccgtcgttttgctcggcggctatattgttctggaaccgcgcagtgccagccattacctgttaagcgatcaaaaatcCCGCCCGGCGTTTTTCTTCCACCAGGCGGGAtttt > 2:689382‑M1/109‑143 (MQ=255) cggTAAAAGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGAGGTCGGTCGAGCGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGAtttt < 1:799058/143‑1 (MQ=255) ttCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACa < 2:46122/143‑1 (MQ=255) cATTATCAATCGCTTCAATAATCCACGGCGTGGCGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTTTACCGGGGTCGCAGCCAGTTGTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAgg < 1:360439/143‑1 (MQ=255) ttATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGGTTTTCTTCCACCAGGCGGGATTTTTGATCGCTCAACAGGtc > 1:776363/1‑142 (MQ=255) tCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAAtg > 1:480490/1‑143 (MQ=255) cgtCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCa < 1:803125/141‑1 (MQ=255) ttCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTCACAGGTAATGGCTGGCAc > 1:451521/1‑143 (MQ=255) ttCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCGTAACAGGTAATGGCTGGCAc > 2:465112/1‑143 (MQ=255) aatCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGcgcg < 1:784232/143‑1 (MQ=255) tCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGt > 2:410558/1‑143 (MQ=255) cGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCGGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTACTGCCTGGCACTGCGCGGTTCCa > 2:642717/1‑143 (MQ=255) ggtggtgCCGCAGTCAAGAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGGCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACaa < 2:778258/143‑1 (MQ=255) ggtggtgCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACaa < 1:788301/143‑1 (MQ=255) tgCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAg < 1:787603/143‑1 (MQ=255) cgaaaaaGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGc < 2:640749/141‑1 (MQ=255) aaaaaaGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCAGAGCa > 1:346892/1‑143 (MQ=255) aaaaaaGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGCCCGGATTTTTGATCGCTTAACATCTCATGGCTGGCACTGCGCGGTTCCAGACCACTATCcccgcctcgca > 1:79703/1‑138 (MQ=255) aaaaaaGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCACGGCGTTTTTCTTCCACCCGGCGGGATTGTTGGTCGCTTAACAGGTACAGGCTGGCAATGCGCGGTGCAAGAACAATAACGccgacggcga > 2:142692/1‑139 (MQ=255) aaaaaaGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCACGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGGTCTGCGCGGTGCCAGGACAATATGGCGGCGGAGcg > 1:334267/1‑142 (MQ=255) tGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATGTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGGTCCAGAACAATATAGCCGCCGAGCAACGCGACGGgcgc > 2:544106/1‑143 (MQ=255) gATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGCTCGCTTACCAGGTAATGGCCGGCACTGCGCCGCTCCAGCCCAATCTAGCCGCCGAGCAAAACGCCGGGCGCa > 2:164888/1‑143 (MQ=255) gATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCa > 2:469648/1‑143 (MQ=255) aTCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCAc > 1:714184/1‑143 (MQ=255) ggTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCCCTGCGCGGTTCCAGAACAATCTGGCCGCCGAGCAAAACGACGGGCGCACtgtg > 2:144446/1‑143 (MQ=255) gTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTgg < 2:714660/143‑1 (MQ=255) cattacctgttaagcgatcaaaaatcccgcctggtggaagaaaaacgccgggcggGATTTTTGATCGCTTAACAGGTAAtg > 1:471338‑M2/56‑81 (MQ=255) cattacctgttaagcgatcaaaaatcccgcctggtggaagaaaaacgccgggcggGATTTTTGATCGCTTAACAGGTAAtg < 2:471338‑M2/26‑1 (MQ=255) cattacctgttaagcgatcaaaaatcCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAAtg > 1:471338‑M1/27‑81 (MQ=255) cattacctgttaagcgatcaaaaatcCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAAtg < 2:471338‑M1/55‑1 (MQ=255) tCTACCAGCCGCGCAGCCAGTTTTGCCGCCCGGCGTTGTTCTTCCGCCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCCCTGGGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGgtt < 2:115281/143‑1 (MQ=255) ccATCGTCGCCTCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCATGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTc < 1:742151/143‑1 (MQ=255) gCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGa < 1:7195/143‑1 (MQ=255) cGTCGCAGCTAGTTTTGCCGCCCGGCTTTTTTCTTCCACCAGGCGGGATGTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGAt < 2:651674/143‑1 (MQ=255) gCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGGACAATGTAGCCGCCGAGCCAACCGCCGGGCGCGCCTCGGCTGCTCCGATcgcg > 1:703311/1‑143 (MQ=255) cAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGAGAATTAGGGTTGTTCAGATCGcga > 2:126692/1‑143 (MQ=255) ccAGTGCTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGcgacga < 2:607358/143‑1 (MQ=255) gTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATc < 1:465112/143‑1 (MQ=255) aaaatcccgcctggtggaagaaaaacgccgggcggGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCCGATCGCGACGAATc > 2:689382‑M2/36‑143 (MQ=255) gCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGaaa < 1:410558/143‑1 (MQ=255) gCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCGCGCACTGCGCGGTTCGAGAACCATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGaaa > 1:677730/1‑143 (MQ=255) tttttCTTCCACCAGGCGGGATTTTTGATTGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCCGAACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGACCGCGACGAATCGTCACCTCCGAAAccc > 2:287979/1‑143 (MQ=255) cttcCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGc < 1:469648/143‑1 (MQ=255) caGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGggcgg > 2:103706/1‑143 (MQ=255) ggcgtGATGTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGggcggcg < 2:150771‑M2/138‑1 (MQ=255) | AACGGCGGTAAAAGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGGGCGGCG > NC_000913/882375‑882654 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |