New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2700077	41 (1.000)	3 (0.080)	3/240	NT	7.1%	intergenic (+154/+40)	yfhL/shoB	putative 4Fe‑4S cluster‑containing protein YfhL/toxic peptide ShoB
	?	NC_000913	= 2700087	41 (1.100)					intergenic (+164/+30)	yfhL/shoB	putative 4Fe‑4S cluster‑containing protein YfhL/toxic peptide ShoB

GAAGTAGAGTATTAATTATATTACTGGGAAGCCTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAG  >  NC_000913/2699936‑2700216                                                                                                                                              |                                                                                                                                            gAAGTAGAGTATTAATTATATTACTGGGAAGCCTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGa                                                                                                                                            >  1:741001/1‑143 (MQ=255)  aaGTAGAGTATTAATTATATTACTGGGAAGCCTTAAAGCTATTATATTTATTTAATTGATGTCATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGAc                                                                                                                                           <  2:87547/143‑1 (MQ=255)   actatagTATTAGTTATTTTACTGGGAAGCCTTAACGCCATTATATTTATTTAATTGATGTCATTAGCATACTCATTCACTAAGTTAATTTAGATAGTATCTGCCCAGACACTTCTTTATAGTTATTCAAGGTGCGTCCGACt                                                                                                                                          <  2:235843/138‑1 (MQ=255)     tAGAGTATTAATTATATTACTGGGAAGCCTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTgg                                                                                                                                        <  2:122120/143‑1 (MQ=255)               attaTAGTACGGGAAAGCCTTAACTCCATTATATTGATTTAATTGATGACATTAGCATCATCCTTCCCTAAGTGGAGGCATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACcggac                                                                                                                              >  2:702379‑M2/1‑138 (MQ=255)                       aCTGGGCAGCCTTAACGCCATTATATTTATTTAATTGATGACATTTGCCTAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTa                                                                                                                      <  2:741001/143‑1 (MQ=255)                       aCTGGGAAGCCTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTa                                                                                                                      >  1:232026/1‑143 (MQ=255)                        cTGGGAAGCCTTAACGCTATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTaa                                                                                                                     <  2:82659/143‑1 (MQ=255)                        cTGGGAAGCCTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTaa                                                                                                                     >  1:442466/1‑143 (MQ=255)                           ggAAGCCTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGTGTCCGgtgaaccagtcggacgcacctttaata                                                                                                                  <  1:693550‑M1/143‑28 (MQ=255)                                ccTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGttt                                                                                                             <  1:447463/143‑1 (MQ=255)                                 cTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGgtgaaccagtcggacgcacctttaataactata                                                                                                            <  1:284193‑M1/143‑34 (MQ=255)                                  ttAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGAGTGGTTCACAGGACGCATCGTAAGTACGTGTcg                                                                                                           >  2:138667/1‑142 (MQ=255)                                  ttAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTACCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTcc                                                                                                           <  1:138436/143‑1 (MQ=255)                                   tAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGgtgaaccagtcggacgcacctttaataactataaa                                                                                                          <  2:281503‑M1/143‑36 (MQ=255)                                       gCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCGtgtg                                                                                                      >  1:665656/1‑143 (MQ=255)                                        ccATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTgtgt                                                                                                     >  1:680394/1‑143 (MQ=255)                                           ttATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTtat                                                                                                  <  2:272403/143‑1 (MQ=255)                                            tataTTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTtata                                                                                                 >  1:606523/1‑143 (MQ=255)                                             atatTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATaa                                                                                                <  1:289130/143‑1 (MQ=255)                                                tttatttaATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGaa                                                                                             <  1:70799/143‑1 (MQ=255)                                                    tttaATTGATGACATTAGCATAATCCTTCATCAAGTTAATTTATATCGTATCTGCCCAGACACTTATTTACAGTTATTAAAGGTGCGTCCGACTGCTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGa                                                                                         <  1:770576/143‑1 (MQ=255)                                                     ttaATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGaa                                                                                        <  2:682422/143‑1 (MQ=255)                                                       aaTTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTCTCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATCAGAACAGAAgg                                                                                      >  2:499149/1‑143 (MQ=255)                                                         ttGATAACATCAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGAt                                                                                    <  2:689442/143‑1 (MQ=255)                                                                 aTTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAATTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTa                                                                            <  2:441908/143‑1 (MQ=255)                                                                 aTTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTa                                                                            >  1:321413/1‑143 (MQ=255)                                                                  ttAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTaa                                                                           <  2:146400/143‑1 (MQ=255)                                                                         aaTCAGTCACTAAGTTGATTTATAAAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCa                                                                    <  2:423881/143‑1 (MQ=255)                                                                           tCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTCTAGTTATTAAAGGTGCGTCCGACTGATTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAGCAACAGAAGGCTCAGCTGTACAACCGCAat                                                                  >  2:107178/1‑143 (MQ=255)                                                                             aTTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAatga                                                                <  1:437896/143‑1 (MQ=255)                                                                                 aCTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGACGGATCAGCTGTAAAACAGCAATgatgat                                                            >  2:101434/1‑143 (MQ=255)                                                                                      gtgcgtgtatataGTCTCTGCCCACACACTTATTTATTGTTATTAAAGGTGCGTCCGACTGTTTCACCGGACGCACCTTAAGTATGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACCGCAATGATGATTTtga                                                       <  2:180848/136‑1 (MQ=255)                                                                                      gTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTTACGGTGTGTCCTACTGGTTAACCTAACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTtga                                                       <  2:357152/143‑1 (MQ=255)                                                                                      gTTAATTTAGATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTtga                                                       <  2:409764/143‑1 (MQ=255)                                                                                          gtttATATAGTATCTGCCCAGTCGCTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGAc                                                   <  2:685557/142‑1 (MQ=255)                                                                                           ttttTATAGTATCTGCCCAGACACTTATTTATAGTTATTTAAGGTGCGTCCGACTGGTTCACCGGACGCATCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGAcc                                                  <  2:368704/143‑1 (MQ=255)                                                                                            ttATATAGTATCTGCCCAGACACTTATTTATAGTTATTCAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGAccc                                                 >  1:153719/1‑143 (MQ=255)                                                                                                       cTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAgg                                      >  2:44335/1‑143 (MQ=255)                                                                                                         gCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTa                                    <  1:533237/143‑1 (MQ=255)                                                                                                            cAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCg                                 <  1:794355/143‑1 (MQ=255)                                                                                                             ggaaccgtatttctAGTTATGAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTACATCAGCAATGATTATTTTGATGACCCGTTTAATCAGGTATCgg                                <  2:788804/136‑1 (MQ=255)                                                                                                               acacTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTCGAGTACGTTTCCAAGTGATATAAGAACAGAAGGATCAGCAGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCa                              >  1:419782/1‑143 (MQ=255)                                                                                                                      tttatAGTTATTAAAGGTGCGTCCGACTGGTTCACcggacgcacctttaataactataaataagtgtctgggcagatactatataaattaacttagtgaatgattatgctaatgtcatcaattaaataaatataatggcgtta                       <  2:281503‑M2/143‑109 (MQ=255)                                                                                                                        tataGTTATTAAAGGTGCGTCCGACTGGTTCACcggacgcacctttaataactataaataagtgtctgggcagatactatataaattaacttagtgaatgattatgctaatgtcatcaattaaataaatataatggcgttaag                     <  1:284193‑M2/143‑111 (MQ=255)                                                                                                                          taGTTATTAAAGGTGCGTCCTACTGTTTCGCCCCACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTc                   <  1:335210/143‑1 (MQ=255)                                                                                                                             ttattaAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTCAGTTTTTTTTTTTTTTTTTAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGtt                <  1:370317/143‑1 (MQ=255)                                                                                                                              tattaAAGGTGCGTCCGACTGGTTCACcggacacacctttaataactataaataagtgtctgggcagatactatataaattaacttagtgaatgattatgctaatgtcatcaattaaataaatataatggcgttaaggcttcc               <  1:693550‑M2/143‑117 (MQ=255)                                                                                                                               attaTAGGTGCGTCCGACTGGTTCACCGCACGTACCTTAAGTACGTTTCTTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGtttt              <  2:408826/143‑1 (MQ=255)                                                                                                                                       tGCGTCCGCATGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTTGAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTaaa      <  1:449712/143‑1 (MQ=255)                                                                                                                                       tGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTaaa      >  1:678687/1‑143 (MQ=255)                                                                                                                                         cGTCCGAATGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATGATGATGACACGTCGAACAAGCACTCGCCAATCAGACATTCGTATTTCCTTAAACa    >  2:779891/1‑143 (MQ=255)                                                                                                                                          gttcGATTGGTTCTCCTGACGCGCCTTAGATTCGTTTCCTTGTGTTGTAACAACAGAATGATCAGCTGTATAAGAGCAATGATGAGTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACaa   <  2:429086/140‑1 (MQ=255)                                                                                                                                          gTCCGgtgaaccagtcggacgcacctttaataactataaataagtgtctgggcagatactatatgcctccacttagggaaggatgatgctaatgtcatcaattaaatcaatataatggagttaaggctttcccgtactataat   >  2:702379‑M1/1‑5 (MQ=255)                                                                                                                                           tCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAg  <  1:435848/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                            GAAGTAGAGTATTAATTATATTACTGGGAAGCCTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAG  >  NC_000913/2699936‑2700216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.