New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2700077	41 (1.000)	3 (0.080)	3/240	NT	7.1%	intergenic (+154/+40)	yfhL/shoB	putative 4Fe‑4S cluster‑containing protein YfhL/toxic peptide ShoB
	?	NC_000913	= 2700087	41 (1.100)					intergenic (+164/+30)	yfhL/shoB	putative 4Fe‑4S cluster‑containing protein YfhL/toxic peptide ShoB

ATTATATTACTGGGAAGCCTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGGAATGCAG  >  NC_000913/2699950‑2700224                                                                                                                                          |                                                                                                                                          attaTAGTACGGGAAAGCCTTAACTCCATTATATTGATTTAATTGATGACATTAGCATCATCCTTCCCTAAGTGGAGGCATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACcggac                                                                                                                                      >  2:702379‑M2/1‑138 (MQ=255)         aCTGGGCAGCCTTAACGCCATTATATTTATTTAATTGATGACATTTGCCTAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTa                                                                                                                              <  2:741001/143‑1 (MQ=255)         aCTGGGAAGCCTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTa                                                                                                                              >  1:232026/1‑143 (MQ=255)          cTGGGAAGCCTTAACGCTATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTaa                                                                                                                             <  2:82659/143‑1 (MQ=255)          cTGGGAAGCCTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTaa                                                                                                                             >  1:442466/1‑143 (MQ=255)                  ccTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGttt                                                                                                                     <  1:447463/143‑1 (MQ=255)                    ttAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGAGTGGTTCACAGGACGCATCGTAAGTACGTGTcg                                                                                                                   >  2:138667/1‑142 (MQ=255)                    ttAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTACCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTcc                                                                                                                   <  1:138436/143‑1 (MQ=255)                         gCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCGtgtg                                                                                                              >  1:665656/1‑143 (MQ=255)                          ccATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTgtgt                                                                                                             >  1:680394/1‑143 (MQ=255)                             ttATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTtat                                                                                                          <  2:272403/143‑1 (MQ=255)                              tataTTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTtata                                                                                                         >  1:606523/1‑143 (MQ=255)                               atatTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATaa                                                                                                        <  1:289130/143‑1 (MQ=255)                                  tttatttaATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGaa                                                                                                     <  1:70799/143‑1 (MQ=255)                                      tttaATTGATGACATTAGCATAATCCTTCATCAAGTTAATTTATATCGTATCTGCCCAGACACTTATTTACAGTTATTAAAGGTGCGTCCGACTGCTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGa                                                                                                 <  1:770576/143‑1 (MQ=255)                                       ttaATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGaa                                                                                                <  2:682422/143‑1 (MQ=255)                                         aaTTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTCTCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATCAGAACAGAAgg                                                                                              >  2:499149/1‑143 (MQ=255)                                           ttGATAACATCAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGAt                                                                                            <  2:689442/143‑1 (MQ=255)                                                   aTTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAATTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTa                                                                                    <  2:441908/143‑1 (MQ=255)                                                   aTTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTa                                                                                    >  1:321413/1‑143 (MQ=255)                                                    ttAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTaa                                                                                   <  2:146400/143‑1 (MQ=255)                                                           aaTCAGTCACTAAGTTGATTTATAAAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCa                                                                            <  2:423881/143‑1 (MQ=255)                                                             tCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTCTAGTTATTAAAGGTGCGTCCGACTGATTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAGCAACAGAAGGCTCAGCTGTACAACCGCAat                                                                          >  2:107178/1‑143 (MQ=255)                                                               aTTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAatga                                                                        <  1:437896/143‑1 (MQ=255)                                                                   aCTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGACGGATCAGCTGTAAAACAGCAATgatgat                                                                    >  2:101434/1‑143 (MQ=255)                                                                        gtgcgtgtatataGTCTCTGCCCACACACTTATTTATTGTTATTAAAGGTGCGTCCGACTGTTTCACCGGACGCACCTTAAGTATGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACCGCAATGATGATTTtga                                                               <  2:180848/136‑1 (MQ=255)                                                                        gTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTTACGGTGTGTCCTACTGGTTAACCTAACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTtga                                                               <  2:357152/143‑1 (MQ=255)                                                                        gTTAATTTAGATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTtga                                                               <  2:409764/143‑1 (MQ=255)                                                                            gtttATATAGTATCTGCCCAGTCGCTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGAc                                                           <  2:685557/142‑1 (MQ=255)                                                                             ttttTATAGTATCTGCCCAGACACTTATTTATAGTTATTTAAGGTGCGTCCGACTGGTTCACCGGACGCATCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGAcc                                                          <  2:368704/143‑1 (MQ=255)                                                                              ttATATAGTATCTGCCCAGACACTTATTTATAGTTATTCAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGAccc                                                         >  1:153719/1‑143 (MQ=255)                                                                                         cTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAgg                                              >  2:44335/1‑143 (MQ=255)                                                                                           gCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTa                                            <  1:533237/143‑1 (MQ=255)                                                                                              cAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCg                                         <  1:794355/143‑1 (MQ=255)                                                                                               ggaaccgtatttctAGTTATGAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTACATCAGCAATGATTATTTTGATGACCCGTTTAATCAGGTATCgg                                        <  2:788804/136‑1 (MQ=255)                                                                                                 acacTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTCGAGTACGTTTCCAAGTGATATAAGAACAGAAGGATCAGCAGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCa                                      >  1:419782/1‑143 (MQ=255)                                                                                                        tttatAGTTATTAAAGGTGCGTCCGACTGGTTCACcggacgcacctttaataactataaataagtgtctgggcagatactatataaattaacttagtgaatgattatgctaatgtcatcaattaaataaatataatggcgtta                               <  2:281503‑M2/143‑109 (MQ=255)                                                                                                          tataGTTATTAAAGGTGCGTCCGACTGGTTCACcggacgcacctttaataactataaataagtgtctgggcagatactatataaattaacttagtgaatgattatgctaatgtcatcaattaaataaatataatggcgttaag                             <  1:284193‑M2/143‑111 (MQ=255)                                                                                                            taGTTATTAAAGGTGCGTCCTACTGTTTCGCCCCACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTc                           <  1:335210/143‑1 (MQ=255)                                                                                                               ttattaAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTCAGTTTTTTTTTTTTTTTTTAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGtt                        <  1:370317/143‑1 (MQ=255)                                                                                                                tattaAAGGTGCGTCCGACTGGTTCACcggacacacctttaataactataaataagtgtctgggcagatactatataaattaacttagtgaatgattatgctaatgtcatcaattaaataaatataatggcgttaaggcttcc                       <  1:693550‑M2/143‑117 (MQ=255)                                                                                                                 attaTAGGTGCGTCCGACTGGTTCACCGCACGTACCTTAAGTACGTTTCTTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGtttt                      <  2:408826/143‑1 (MQ=255)                                                                                                                         tGCGTCCGCATGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTTGAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTaaa              <  1:449712/143‑1 (MQ=255)                                                                                                                         tGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTaaa              >  1:678687/1‑143 (MQ=255)                                                                                                                           cGTCCGAATGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATGATGATGACACGTCGAACAAGCACTCGCCAATCAGACATTCGTATTTCCTTAAACa            >  2:779891/1‑143 (MQ=255)                                                                                                                            gttcGATTGGTTCTCCTGACGCGCCTTAGATTCGTTTCCTTGTGTTGTAACAACAGAATGATCAGCTGTATAAGAGCAATGATGAGTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACaa           <  2:429086/140‑1 (MQ=255)                                                                                                                             tCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAg          <  1:435848/143‑1 (MQ=255)                                                                                                                                 aCTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGGaac      >  2:541895/1‑142 (MQ=255)                                                                                                                                     gTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGGAATGCAg  >  2:164381/1‑143 (MQ=255)                                                                                                                                          |                                                                                                                                          ATTATATTACTGGGAAGCCTTAACGCCATTATATTTATTTAATTGATGACATTAGCATAATCATTCACTAAGTTAATTTATATAGTATCTGCCCAGACACTTATTTATAGTTATTAAAGGTGCGTCCGACTGGTTCACCGGACGCACCTTAAGTACGTTTCCTTGTGTTATAAGAACAGAAGGATCAGCTGTAAAACAGCAATGATGATTTTGATGACCCGTTTAATCAGGTATCGGCAATCAGTCATTCGTTTTTCCTTAAACAAGGAATGCAG  >  NC_000913/2699950‑2700224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.