New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3603658 =	48 (1.170)	3 (0.080)	3/250	NT	6.4%	coding (586/1494 nt)	ftsY	signal recognition particle receptor
	?	NC_000913	3603682 =	43 (1.110)					coding (562/1494 nt)	ftsY	signal recognition particle receptor

TCCACACCCACATCGGCGATCAAAAGCTGCTCTTCCAGCTCCTCAAACAGATCATCGTCGATTTTTTTACCGCGGAACAGGCTGATAAATCCGGAACCGAGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAATT  >  NC_000913/3603516‑3603797                                                                                                                                               |                                                                                                                                            gcggaagaagaagcggctaaagaagaaattaccgacgaagagctggaaacggcgctggctgccgaagcggcagaagaggcggtgatggtggttcctccggcagaagaagagcagccggtggaagaaatcgctcaggagcggga                                                                                                                                             <  1:445289‑M1/1‑1 (MQ=255)   gccccccACAGCGGCGATCAAAAGCTGCTCTTCCAGCTCCTCAAACAGATCATCGTCGATTTTTTTACCGCGGAACAGGCTGATAAATCCGGAACCGAGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGaaaa                                                                                                                                           <  2:286844/139‑1 (MQ=255)   cacaCCCACATCGGCGATCAAAAGCTGCTCTTCCAGCTCCTCAAACAGATCATCGTCGATTTTTTTACCGCGGAACAGGCTGATAAATCCGGAACCGAGATTTTCTGTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGaaaa                                                                                                                                           <  1:520006/143‑1 (MQ=255)    acacCCACATCGGCGATCAAAAGCTGCTCTTCCAGCTCCTCAAACAGATCATCGTCGATTTTTTTACCGCGGAACAGGCTGATAAATCCGGAACCGAGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGaaaaa                                                                                                                                          >  1:201026/1‑143 (MQ=255)    acacCCACATCGGCGATCAAAAGCTGCTCTTCCAGCTCCTCAAACAGATCATCGTCGATTTTTTTACCCCGGAACAGGCTGATAAATCCGGCACCGAGCTGTTCTTTGGCTCTTAACCGGCTGCGTTTCAGGCGCGCGaaaaa                                                                                                                                          >  2:466362/1‑143 (MQ=255)            aTCGGCGATCAAAAGCTGCTCTTCCAGCTCCTCAAACAGATCATCGTCGATTTTTTTACCGTGTAACATGCTGATAAATCCGGAACCGAGATTTTCTTTGGTTTTTAACAGCCTTCTTTTCAGTCCCGCGAACGAACcttcct                                                                                                                                  >  2:102748/1‑141 (MQ=255)             tCGGCGATCAAAAGCTGCTCTTCCAGCTCCTCAAACAGATCATCGTCGATTTTTTTACCGCGGAACAGGCTGATAAATCCGGAACCGAGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCttt                                                                                                                                 <  2:413755/143‑1 (MQ=255)             gcggctaaagaagaaattaccgacgaagagctggaaacggcgctggctgccgaagcggcagaagaggcggtgatggtggttcctccggcagaagaagagcagccgggggaagaaatcgctcaggagcaggaaaaacggaacaa                                                                                                                                 <  2:498798‑M1/13‑8 (MQ=255)                  gATCAAAAGCTGCTCTTCCAGCTCCTCAAACAGATCATCGTCGATTTTTTTACCGCGGAACAGGCTGATAAATCCGGAACCGAGATTTTCTTTGGTTTTTACCGGGCTGCGTTTCAGGCGCGCGAATAAACCTCCCTTGGCCg                                                                                                                            >  1:38999/1‑143 (MQ=255)                   aTCAAAAGCTGCTCTTCCAGCTCCTCAAACAGATCATCGTCGATTTTTTTACCGCGGAACAGGCTGATAAATCCGGAACCGAGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCgg                                                                                                                           >  1:596533/1‑143 (MQ=255)                   aTCAAAAGCTGCTCTTCCAGCTCCTCAAACAGATCATCGTCGATTTTTTTACCGCGGAACAGGCTGATAAATCCGGAACCGAGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGATCgg                                                                                                                           >  1:517332/1‑143 (MQ=255)                    tCAAAAGCTGCTCTTCCAGCTCCTCAAACAGATCATCGTCGATTTTTTTACCGCGGAACAGGCTGATAAATCCGGAACCGAGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGt                                                                                                                          >  1:313754/1‑143 (MQ=255)                      aaaaGCTGCTCTTCCAGCTCCTCAAACAGATCATCGTCGATTTTTTTACCGCGAAAAAGGCTGATAAATCCGGAACCGAGATTTTCTTTGGTATTTAACAGGCGGCGTTCCAGGCCCGCGAACAAACCTTCATTGGCCggctg                                                                                                                        >  2:323969/1‑140 (MQ=255)                         aGCTGCTCTGCCAGCTCCTCAAACAGCGCATCGTCGATTGTTGGACCGCGGAACAGACAGATCAACCCGGAACCGAGATTTTCTTTGGTTTTTAACACGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTc                                                                                                                     <  1:29927/143‑1 (MQ=255)                                     gaagagctggaaacggcgctggctgccgaagcggcagaagaggcggtgatggtggttcctccggcagaagaagagcagccggtggaagaaatcgctcaggagcaggAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGc                                                                                                         >  1:781370‑M1/107‑143 (MQ=255)                                        gagctggaaacggcgctggctgccgaagcggcagaagaggcggtgatggtggttcctccggcagaagaagagcagccggtggaagaaatcgctcaggagcaggAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGAt                                                                                                      >  1:529435‑M1/104‑143 (MQ=255)                                           cgggaatcggcgcgggctcccgaaggggccgcagaggcggtgattgcggttcctccggcagaagaggaccagccggtggatgaaatcgctcaggagcaggAAACACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATttc                                                                                                   >  2:122086‑M1/101‑143 (MQ=255)                                             aaaCAGATCATCGTCGATTTTTTTACCGCGGAACAGGCTGATAGATCCGGAACCGAGATTTTCTTTGGTTTGTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATttctt                                                                                                 <  1:220723/143‑1 (MQ=255)                                             aaaCAGATCATCGTCGATTTTTTTACCGCGGAACAGGCTGATAAATCCGGAACCGAGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATttctt                                                                                                 <  1:630765/143‑1 (MQ=255)                                                          tcgATTTTTTTACCGCGGAACAGGCTGATAATTCCGGAACCGAGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGctc                                                                                    >  1:744727/1‑143 (MQ=255)                                                             aTTTTTTTACCGCGGAACAGGCTGATAAATCCGGAACCGAGCTTTTCTTTGGGTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAGACCTTCTTTGGTCGGGGTTTCTTGCTCCTGAGCGGGTTGTTTCACCggcggcggttc                                                                                 >  1:276246/1‑138 (MQ=255)                                                             aTTTTTTTACCGCGGAACAGGCTGATAAATCCGGAACCGAGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCtcttc                                                                                 <  2:201026/143‑1 (MQ=255)                                                             aTTGTTTTACCGCGGACCAGGTTGATAAATCCGGAACCGAGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCtcttc                                                                                 <  2:43250/143‑1 (MQ=255)                                                                 ttttACCGCGGAACAGGCTGATAAATCCGGAACCGAGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCtcttcttct                                                                             <  1:415206/143‑1 (MQ=255)                                                                   ttACCGCGGAACAGGCTGCTAAAGCCGGAACCGAGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGc                                                                           <  1:507/143‑1 (MQ=255)                                                                    tACCGCGGAACAGGCTGATAAATCCGGAACCGAGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTCCTTTGGTCGGTTTTCCCTGCTCCTGCGCCAGTTCTTCCACCGGCTGCTCTTCACCTGcc                                                                          >  2:462291/1‑143 (MQ=255)                                                                       cgcgGAACAGGCTGATGGATCCGGAACCGAGATTTTCTTTGGTGGTTAACGGGGTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCggg                                                                       >  2:445289/1‑142 (MQ=255)                                                                       cgcgGAACAGGCTGATAAATCCGGAACCGAGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCgga                                                                       <  1:672380/143‑1 (MQ=255)                                                                       cgcgGAACAGGCTGATAAATCCGGAACCGAGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCgga                                                                       >  1:463928/1‑143 (MQ=255)                                                                       cgcgGAACAGGCTGATAAATCCGGAACCGAGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGCCTGCTCTTCTTCTGCCgga                                                                       >  2:171689/1‑143 (MQ=255)                                                                         cgGAACAGGCTGATAAATCCGGAACCGAGATTTTCTTTGGTTTTTAACAGGCTTCGTTTCAGGCGCGCGAAGAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCggagg                                                                     >  2:33188/1‑143 (MQ=255)                                                                            aaCCGGCTGATAAATCCGGAACCGAGATTTTCTTTGGTTTCTAACAGGCTGCGTTCCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAac                                                                  <  1:57384/143‑1 (MQ=255)                                                                            aaCAGGCTGATAAATCCGGAACCGAGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCGTCTTCAGCCGGAGGAac                                                                  >  1:498745/1‑143 (MQ=255)                                                                               acgCTGATAAATCCGGAACCGAGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGCTTTCTTCCCACGGCTGCTCTTCTTCTGCCGGAGGAaccac                                                               <  1:808520/141‑1 (MQ=255)                                                                                         aTCCGGAACCGAGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGcc                                                     >  2:597921/1‑143 (MQ=255)                                                                                          tCCGGAACCGAGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTGTTCTGCCGGGGGAACCACCATCACCCCct                                                    >  2:806257/1‑143 (MQ=255)                                                                                          tCCGGAACCGAGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCct                                                    >  1:488152/1‑143 (MQ=255)                                                                                                  cGAGTTTGTCTTTGGCTTGTGTCAGGCTGCGTGTCAGGCGCGCGACAAAACCTTCTTTGGTCGGGTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGcc                                            <  2:24077/143‑1 (MQ=255)                                                                                                  cGAGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGcc                                            <  2:596533/143‑1 (MQ=255)                                                                                                    agaTTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCAGCGGCTGTTCTTCTTCTGCCGGAGGTACAACCATCACGGCCTCTTCTGACGc                                          >  2:307163/1‑143 (MQ=255)                                                                                                      aTTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCgaag                                        <  2:313754/143‑4 (MQ=255)                                                                                                         ttCGTTGGTTTTTAACAGGCTGCGGTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCgg                                     <  2:749809/143‑1 (MQ=255)                                                                                                           cgttGGTTGTTAACAGGCTGCGTTTCAGGCGCGCGAAAAACCCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGca                                   <  1:648627/141‑1 (MQ=255)                                                                                                           cTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGca                                   <  1:701352/143‑1 (MQ=255)                                                                                                              tGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCGTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAACCACCCTCACCGCCTCTTCTGCCGCTTCGGcagcc                                >  2:452477/1‑143 (MQ=255)                                                                                                               ggTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTATTTGGTCGGTTTTTCATGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACAGAATCTTCGGGCGCGTCGGcatcca                               >  2:336246/1‑143 (MQ=255)                                                                                                                      aaCAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGt                        <  1:696880/143‑1 (MQ=255)                                                                                                                        cAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAGCCACCCTCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCggta                      >  1:457561/1‑140 (MQ=255)                                                                                                                          tgCTGCGTGTCAGGCGTGCGACAACACCTTCGTTGGTCGGTGTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTcc                    <  2:276246/142‑1 (MQ=255)                                                                                                                           gCTGCGTTGCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCa                   <  1:175483/143‑1 (MQ=255)                                                                                                                             tGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTCCTCTTCTTCTGCCGGAGGAACCACCCTCCCCGCCTCCTCTGCCGCTTCGGAAGCCAGCGCCGCTTCCacc                 >  1:70127/1‑141 (MQ=255)                                                                                                                                    ccgcggcgcgAAAAATGCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCGGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTtcgt          <  1:192601/138‑1 (MQ=255)                                                                                                                                    cAGGCGCGCGTAAAAACCTTCTGTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTtcgt          <  2:86209/143‑1 (MQ=255)                                                                                                                                    cAGGCGCGCGAAGAATCCTTCTTTGGTCGGTTTTTCCTGCTCCGGAGCGATTGCTTCCACCGGCTGCTCTTCTGCTGCCGTAGGAACCACCATCAGCGCCGCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTtcgt          <  2:183334/143‑1 (MQ=255)                                                                                                                                     atgcgcgaGAAAAAACCGTCGTTGGTCGGTTTCTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTtcgtc         <  1:452053/141‑1 (MQ=255)                                                                                                                                     aGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCCCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTtcgtc         <  1:708708/143‑1 (MQ=255)                                                                                                                                        cgcgcgAACAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGt      <  2:626039/143‑1 (MQ=255)                                                                                                                                            cgAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCCGCGCCGTTTCCCGCTCCTCGTCGGTACtt  >  2:692178/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                            TCCACACCCACATCGGCGATCAAAAGCTGCTCTTCCAGCTCCTCAAACAGATCATCGTCGATTTTTTTACCGCGGAACAGGCTGATAAATCCGGAACCGAGATTTTCTTTGGTTTTTAACAGGCTGCGTTTCAGGCGCGCGAAAAAACCTTCTTTGGTCGGTTTTTCCTGCTCCTGAGCGATTTCTTCCACCGGCTGCTCTTCTTCTGCCGGAGGAACCACCATCACCGCCTCTTCTGCCGCTTCGGCAGCCAGCGCCGTTTCCAGCTCTTCGTCGGTAATT  >  NC_000913/3603516‑3603797

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.