New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 146343756 (1.360)6 (0.150) 5/262 NT 9.7% coding (1313/1314 nt) paaK phenylacetate‑CoA ligase
?NC_000913 = 1463490 56 (1.380)intergenic (+52/‑49) paaK/paaX phenylacetate‑CoA ligase/DNA‑binding transcriptional repressor PaaX

TCGTTAACTGTGGCAGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTATGGTGATTC  >  NC_000913/1463359‑1463627
                                                                                                                                   |                                                                                                                                         
tCGTTAACTGTGGCAGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCGGGTGGGGTAAAGCGCCAGGGCCGGAAGTCGATACGAACTGTGCTCTg                                                                                                                                >  2:227350/1‑143 (MQ=255)
 cGTTAGCTGGGGCAGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGGGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGa                                                                                                                               <  2:93341/143‑1 (MQ=255)
   ttAACTGTGGCAGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGAtt                                                                                                                             >  1:349524/1‑143 (MQ=255)
     agcTGTGTCAGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCa                                                                                                                           <  2:404679/141‑1 (MQ=255)
        ggtgGCAGTGTCCCGCGTTCAGACGGCGAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCTGAAGTCGATACGACCTGTGCTATGATTCATaa                                                                                                                        <  2:423356/142‑1 (MQ=255)
          tgGCAGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGCTACGACCTGTGCTATGACTCCTAAAt                                                                                                                      >  1:581769/1‑143 (MQ=255)
          tgGCAGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAAt                                                                                                                      <  2:452637/143‑1 (MQ=255)
            gCAGTATCCCGCGTTCAGAAGGCAAGGCGTGGCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATca                                                                                                                    <  2:79430/143‑1 (MQ=255)
             cAGTATCCCGCGTTCAGAAGGCAAGGCGTGTGGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTAGCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATcac                                                                                                                   <  2:260872/143‑1 (MQ=255)
             cAGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATcac                                                                                                                   <  1:440423/143‑1 (MQ=255)
              aGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATcaca                                                                                                                  <  1:790205/143‑1 (MQ=255)
               gTATCCCGCGTTCAGAAGGCATGGCGTGTCGGGTGTTTGATCTGCGCTATATTGTTGGTGCCTGACTTATTGTTTGGTTTTGGTGGGGTAAAGCGCCAGGGACAGAAGTCGATACGACCTGTGCTATGATTCATAAATCacaa                                                                                                                 <  1:77596/143‑1 (MQ=255)
                  tCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCAcaacaa                                                                                                              >  1:17031/1‑143 (MQ=255)
                  tCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCAcaacaa                                                                                                              >  1:24970/1‑143 (MQ=255)
                     cgcgTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTAGCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGGTTCATAAATCACCACAATaa                                                                                                           >  1:221478/1‑143 (MQ=255)
                            aGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGa                                                                                                    >  1:688565/1‑143 (MQ=255)
                             gAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAACTCACAACAATAACAACAGAc                                                                                                   >  2:493950/1‑143 (MQ=255)
                              aaggcaaggcGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATCACAACAGACt                                                                                                  >  1:28114/1‑143 (MQ=255)
                                 gcaaggcGTGTCGGGTGTTTGAGCTGCGCAATATTGTTGGGGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGaa                                                                                               <  1:395849/143‑1 (MQ=255)
                                      gcGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTCACGCATCGTCTGGCTCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGaa                                                                                          <  2:408449/143‑1 (MQ=255)
                                         tgtCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGa                                                                                       <  1:397058/143‑1 (MQ=255)
                                         tgtCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGACCGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACCGACTGAAGCGAATgc                                                                                       >  2:298591/1‑142 (MQ=255)
                                               gtgtTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAAc                                                                                 <  1:659294/143‑1 (MQ=255)
                                                     gATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGCAGTCGATACGACCTGTGCTCTGACTCATAAATCCCAACCATAACAACAGACTGAAGCGAAGGCGCAAACATGATa                                                                           >  2:82144/1‑143 (MQ=255)
                                                      aTCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATAc                                                                          >  1:519375/1‑143 (MQ=255)
                                                       tCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACt                                                                         >  1:7680/1‑143 (MQ=255)
                                                       tCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGAGACAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACt                                                                         >  1:360134/1‑143 (MQ=255)
                                                        cTGCGCAATATTGTTGGTGCCTGCCGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACtt                                                                        <  1:441573/143‑1 (MQ=255)
                                                                tatTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCaa                                                                <  2:349524/143‑1 (MQ=255)
                                                                    gtgggTGCCGGGCGTAGCGTCAGGCCCCGGTGGGGTAAAGCGCCAGGGACAGACGACCCTACGACCAGTGCGATGATTCATAAATCACAACAATAACAACAGATTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATg                                                            <  2:14578/140‑1 (MQ=255)
                                                                      gggTGCCGGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCt                                                          <  1:608014/142‑1 (MQ=255)
                                                                        gTGCCTGCCGTATCGTCTGGCCCTTGGGGGGTAAAGCGCCTGGGCCAGAAGTCGATACGATCTGTGCTATGATTCATAAATCACAACAATAACAGTAGTCTTGTTCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGt                                                        <  2:657401/143‑1 (MQ=255)
                                                                           ccTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGTcaggcaccaacaatattgcgcagatcaaacacccgacacgccttgccttctgaacgcgggatactgccacagttaacgatcatcac                                                     <  1:236210‑M2/143‑87 (MQ=255)
                                                                              gACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGc                                                  <  1:612261/143‑1 (MQ=255)
                                                                                  tATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATAGTTTTATCCAACATGCTGTAAACGccttt                                              >  2:588315/1‑139 (MQ=255)
                                                                                         tGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAAGAACAACAGACCGAAGCGAATGAGTAAACTTGATACTTTTCTCCAACATGCTGTAACCGCTGTTCCGGTCa                                       >  1:61378/1‑143 (MQ=255)
                                                                                           gCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGAcaggcaccaacaatattgcgcagatcaaacacccgacacgccttgccttctgaacgccggatactcccacaggtaacgatcagcacatcgctggcgatcccc                                     <  2:513816‑M2/143‑103 (MQ=255)
                                                                                           gCCCTGGTGGGGTAAAGCGCCAGGGCCAGA‑‑‑CGATACGTcaggcaccaacaatattgcgcagatcaaacacccgacacgccttgccttctgaacgcgggatactgccacagttaacgatcatcacatcggtagagatccccacc                                  <  2:594050‑M2/143‑106 (MQ=255)
                                                                                            cccTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGAcaggcaccaacaatattgcgcagatcaaacacccgacacgccttgccttctgaacgcgggatactgccacagttaacgatcatcacatcggtagagatcccca                                    <  2:539923‑M2/143‑104 (MQ=255)
                                                                                             ccTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGCTTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCTGTCAGTgg                                   >  2:101068/1‑143 (MQ=255)
                                                                                             ccTGGTGGGGTAAAGCGCCAGGGCCAGA‑‑‑CGATACGTcaggcaccaacaatattgcgcagatcaaacacccgacacgccttgccttctgaacgcgggatactgccacagttaacgctcatcacatcggtagagatccccaccat                                <  1:349207‑M2/143‑108 (MQ=255)
                                                                                              cTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGc                                  >  1:707873/1‑143 (MQ=255)
                                                                                              cTGGTGGGGTAAAGCGCCAGGGCCAGA‑‑‑CAATACGTcaggcaccaacaatattgcgcagatcaaacacccgacacgccttgccttctgaacgcgggatactgcgacaatgaacgatcatcacatcggtcgagatacgcagcatc                               <  1:173133‑M2/143‑109 (MQ=255)
                                                                                               tggtggGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGca                                 >  1:441508/1‑143 (MQ=255)
                                                                                                  tggGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTGAGTGGcacag                              >  1:9037/1‑142 (MQ=255)
                                                                                                   ggtgTAAAGCGCCAGGGCTAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATc                             <  1:118048/140‑1 (MQ=255)
                                                                                                         aaGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGAt                       <  1:779418/143‑1 (MQ=255)
                                                                                                         aaGAGCCAGGGCCAGAAGTCGATACGCCCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATTAGTAAATTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTTAGTGGCACATCTTTGAt                       <  1:313664/143‑1 (MQ=255)
                                                                                                          ggcgttaGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTGCCGGTCAGTGGCACATCTTTGAtc                      <  2:161569/137‑1 (MQ=255)
                                                                                                            cgcCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTc                                             <  2:627343/118‑1 (MQ=255)
                                                                                                            cgcCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTc                                             >  1:627343/1‑118 (MQ=255)
                                                                                                              ccggggCCAGAAGTCGACACGACCTGTGCGATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATctcct                  <  1:666792/140‑1 (MQ=255)
                                                                                                                    gcAGAAGTCGCTGCGACCTGGGCTATGGTTCATAAATCCCAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATCCTTTTATCCACCATGCTGTAACCGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGt            <  2:595577/142‑1 (MQ=255)
                                                                                                                    ccAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGt            <  1:770748/143‑1 (MQ=255)
                                                                                                                    ccAGAAGTCGATACGACCTGTGCTAAGCTTCGTCAATTGTAACAATAACAACAGACTGAAGCGAATGAGTAAACTCGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGt            <  1:216963/143‑1 (MQ=255)
                                                                                                                     cAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTACACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTa           >  2:701586/1‑143 (MQ=255)
                                                                                                                     cAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCctcttttta           >  1:607473/1‑138 (MQ=255)
                                                                                                                     cAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCAGTCAGTGGCACATCTTTGCTATCctctacgta           >  2:631225/1‑138 (MQ=255)
                                                                                                                       gAAGTCGATGCGACCTGTGCTCTGGCTCATAAATCACAACAATAACAGCAGACTGAAGCGAACGAGTAATCTTGATACTTCTATCCAACATGCTGTAAACGCTGTTGCGGTCAGTGGCACATCTTTGATCTCCCCTCTGTATg         <  2:207659/143‑1 (MQ=255)
                                                                                                                          gTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCCCTCTGTATGGTg      >  2:617196/1‑143 (MQ=255)
                                                                                                                            cGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTATGGTGAt    <  2:17031/143‑1 (MQ=255)
                                                                                                                              aTACGACCTGTGCTATGATTCATAAATCACAACAATCACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGACCCCCCCTCTCTATGGTCATTc  >  2:135606/1‑143 (MQ=255)
                                                                                                                                   |                                                                                                                                         
TCGTTAACTGTGGCAGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTATGGTGATTC  >  NC_000913/1463359‑1463627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.