New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 1463437 | 56 (1.360) | 6 (0.150) | 5/262 | NT | 9.7% | coding (1313/1314 nt) | paaK | phenylacetate‑CoA ligase |
? | NC_000913 | = 1463490 | 56 (1.380) | intergenic (+52/‑49) | paaK/paaX | phenylacetate‑CoA ligase/DNA‑binding transcriptional repressor PaaX |
TCGTTAACTGTGGCAGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTATGGTGATTC > NC_000913/1463359‑1463627 | tCGTTAACTGTGGCAGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCGGGTGGGGTAAAGCGCCAGGGCCGGAAGTCGATACGAACTGTGCTCTg > 2:227350/1‑143 (MQ=255) cGTTAGCTGGGGCAGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGGGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGa < 2:93341/143‑1 (MQ=255) ttAACTGTGGCAGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGAtt > 1:349524/1‑143 (MQ=255) agcTGTGTCAGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCa < 2:404679/141‑1 (MQ=255) ggtgGCAGTGTCCCGCGTTCAGACGGCGAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCTGAAGTCGATACGACCTGTGCTATGATTCATaa < 2:423356/142‑1 (MQ=255) tgGCAGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGCTACGACCTGTGCTATGACTCCTAAAt > 1:581769/1‑143 (MQ=255) tgGCAGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAAt < 2:452637/143‑1 (MQ=255) gCAGTATCCCGCGTTCAGAAGGCAAGGCGTGGCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATca < 2:79430/143‑1 (MQ=255) cAGTATCCCGCGTTCAGAAGGCAAGGCGTGTGGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTAGCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATcac < 2:260872/143‑1 (MQ=255) cAGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATcac < 1:440423/143‑1 (MQ=255) aGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATcaca < 1:790205/143‑1 (MQ=255) gTATCCCGCGTTCAGAAGGCATGGCGTGTCGGGTGTTTGATCTGCGCTATATTGTTGGTGCCTGACTTATTGTTTGGTTTTGGTGGGGTAAAGCGCCAGGGACAGAAGTCGATACGACCTGTGCTATGATTCATAAATCacaa < 1:77596/143‑1 (MQ=255) tCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCAcaacaa > 1:17031/1‑143 (MQ=255) tCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCAcaacaa > 1:24970/1‑143 (MQ=255) cgcgTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTAGCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGGTTCATAAATCACCACAATaa > 1:221478/1‑143 (MQ=255) aGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGa > 1:688565/1‑143 (MQ=255) gAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAACTCACAACAATAACAACAGAc > 2:493950/1‑143 (MQ=255) aaggcaaggcGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATCACAACAGACt > 1:28114/1‑143 (MQ=255) gcaaggcGTGTCGGGTGTTTGAGCTGCGCAATATTGTTGGGGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGaa < 1:395849/143‑1 (MQ=255) gcGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTCACGCATCGTCTGGCTCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGaa < 2:408449/143‑1 (MQ=255) tgtCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGa < 1:397058/143‑1 (MQ=255) tgtCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGACCGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACCGACTGAAGCGAATgc > 2:298591/1‑142 (MQ=255) gtgtTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAAc < 1:659294/143‑1 (MQ=255) gATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGCAGTCGATACGACCTGTGCTCTGACTCATAAATCCCAACCATAACAACAGACTGAAGCGAAGGCGCAAACATGATa > 2:82144/1‑143 (MQ=255) aTCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATAc > 1:519375/1‑143 (MQ=255) tCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACt > 1:7680/1‑143 (MQ=255) tCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGAGACAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACt > 1:360134/1‑143 (MQ=255) cTGCGCAATATTGTTGGTGCCTGCCGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACtt < 1:441573/143‑1 (MQ=255) tatTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCaa < 2:349524/143‑1 (MQ=255) gtgggTGCCGGGCGTAGCGTCAGGCCCCGGTGGGGTAAAGCGCCAGGGACAGACGACCCTACGACCAGTGCGATGATTCATAAATCACAACAATAACAACAGATTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATg < 2:14578/140‑1 (MQ=255) gggTGCCGGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCt < 1:608014/142‑1 (MQ=255) gTGCCTGCCGTATCGTCTGGCCCTTGGGGGGTAAAGCGCCTGGGCCAGAAGTCGATACGATCTGTGCTATGATTCATAAATCACAACAATAACAGTAGTCTTGTTCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGt < 2:657401/143‑1 (MQ=255) ccTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGTcaggcaccaacaatattgcgcagatcaaacacccgacacgccttgccttctgaacgcgggatactgccacagttaacgatcatcac < 1:236210‑M2/143‑87 (MQ=255) gACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGc < 1:612261/143‑1 (MQ=255) tATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATAGTTTTATCCAACATGCTGTAAACGccttt > 2:588315/1‑139 (MQ=255) tGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAAGAACAACAGACCGAAGCGAATGAGTAAACTTGATACTTTTCTCCAACATGCTGTAACCGCTGTTCCGGTCa > 1:61378/1‑143 (MQ=255) gCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGAcaggcaccaacaatattgcgcagatcaaacacccgacacgccttgccttctgaacgccggatactcccacaggtaacgatcagcacatcgctggcgatcccc < 2:513816‑M2/143‑103 (MQ=255) gCCCTGGTGGGGTAAAGCGCCAGGGCCAGA‑‑‑CGATACGTcaggcaccaacaatattgcgcagatcaaacacccgacacgccttgccttctgaacgcgggatactgccacagttaacgatcatcacatcggtagagatccccacc < 2:594050‑M2/143‑106 (MQ=255) cccTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGAcaggcaccaacaatattgcgcagatcaaacacccgacacgccttgccttctgaacgcgggatactgccacagttaacgatcatcacatcggtagagatcccca < 2:539923‑M2/143‑104 (MQ=255) ccTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGCTTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCTGTCAGTgg > 2:101068/1‑143 (MQ=255) ccTGGTGGGGTAAAGCGCCAGGGCCAGA‑‑‑CGATACGTcaggcaccaacaatattgcgcagatcaaacacccgacacgccttgccttctgaacgcgggatactgccacagttaacgctcatcacatcggtagagatccccaccat < 1:349207‑M2/143‑108 (MQ=255) cTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGc > 1:707873/1‑143 (MQ=255) cTGGTGGGGTAAAGCGCCAGGGCCAGA‑‑‑CAATACGTcaggcaccaacaatattgcgcagatcaaacacccgacacgccttgccttctgaacgcgggatactgcgacaatgaacgatcatcacatcggtcgagatacgcagcatc < 1:173133‑M2/143‑109 (MQ=255) tggtggGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGca > 1:441508/1‑143 (MQ=255) tggGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTGAGTGGcacag > 1:9037/1‑142 (MQ=255) ggtgTAAAGCGCCAGGGCTAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATc < 1:118048/140‑1 (MQ=255) aaGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGAt < 1:779418/143‑1 (MQ=255) aaGAGCCAGGGCCAGAAGTCGATACGCCCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATTAGTAAATTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTTAGTGGCACATCTTTGAt < 1:313664/143‑1 (MQ=255) ggcgttaGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTGCCGGTCAGTGGCACATCTTTGAtc < 2:161569/137‑1 (MQ=255) cgcCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTc < 2:627343/118‑1 (MQ=255) cgcCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTc > 1:627343/1‑118 (MQ=255) ccggggCCAGAAGTCGACACGACCTGTGCGATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATctcct < 1:666792/140‑1 (MQ=255) gcAGAAGTCGCTGCGACCTGGGCTATGGTTCATAAATCCCAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATCCTTTTATCCACCATGCTGTAACCGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGt < 2:595577/142‑1 (MQ=255) ccAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGt < 1:770748/143‑1 (MQ=255) ccAGAAGTCGATACGACCTGTGCTAAGCTTCGTCAATTGTAACAATAACAACAGACTGAAGCGAATGAGTAAACTCGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGt < 1:216963/143‑1 (MQ=255) cAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTACACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTa > 2:701586/1‑143 (MQ=255) cAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCctcttttta > 1:607473/1‑138 (MQ=255) cAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCAGTCAGTGGCACATCTTTGCTATCctctacgta > 2:631225/1‑138 (MQ=255) gAAGTCGATGCGACCTGTGCTCTGGCTCATAAATCACAACAATAACAGCAGACTGAAGCGAACGAGTAATCTTGATACTTCTATCCAACATGCTGTAAACGCTGTTGCGGTCAGTGGCACATCTTTGATCTCCCCTCTGTATg < 2:207659/143‑1 (MQ=255) gTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCCCTCTGTATGGTg > 2:617196/1‑143 (MQ=255) cGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTATGGTGAt < 2:17031/143‑1 (MQ=255) aTACGACCTGTGCTATGATTCATAAATCACAACAATCACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGACCCCCCCTCTCTATGGTCATTc > 2:135606/1‑143 (MQ=255) | TCGTTAACTGTGGCAGTATCCCGCGTTCAGAAGGCAAGGCGTGTCGGGTGTTTGATCTGCGCAATATTGTTGGTGCCTGACGTATCGTCTGGCCCTGGTGGGGTAAAGCGCCAGGGCCAGAAGTCGATACGACCTGTGCTATGATTCATAAATCACAACAATAACAACAGACTGAAGCGAATGAGTAAACTTGATACTTTTATCCAACATGCTGTAAACGCTGTTCCGGTCAGTGGCACATCTTTGATCTCCTCTCTGTATGGTGATTC > NC_000913/1463359‑1463627 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |