mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 572414 | 624 (15.210) | 4 (0.100) | 3/256 | NT | 0.72% | coding (47/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572426 | 495 (12.450) | coding (59/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | = 572411 | 654 (15.940) | 5 (0.130) | 4/250 | NT | 0.94% | coding (44/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572431 | 437 (11.250) | coding (64/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | 572405 = | 683 (16.650) | 13 (0.420) +31 bp |
10/202 | NT | 2.4% | coding (38/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 1095504 | NA (NA) | intergenic (‑67/‑40) | insE‑4/ymdE | IS3 element protein InsE/protein YmdE | |||||
| * | ? | NC_000913 | = 572325 | 1480 (36.070) | 18 (0.470) | 10/244 | NT | 1.3% | intergenic (+74/‑43) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572334 | 1451 (38.290) | intergenic (+83/‑34) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | 570695 = | 1651 (40.240) | 26 (0.670) | 14/250 | NT | 1.7% | intergenic (+267/‑198) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570719 = | 1463 (37.670) | intergenic (+291/‑174) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | = 570639 | 1777 (43.310) | 4 (0.110) | 3/238 | NT | 0.24% | intergenic (+211/‑254) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | = 570663 | 1674 (45.300) | intergenic (+235/‑230) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 570627 = | 1751 (42.680) | 7 (0.190) | 4/238 | NT | 0.43% | intergenic (+199/‑266) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570677 = | 1674 (45.300) | intergenic (+249/‑216) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | = 568908 | 2102 (51.230) | 3 (0.080) | 3/250 | NT | 0.15% | coding (7/1527 nt) | ybcK | DLP12 prophage; putative recombinase |
| ? | NC_000913 | = 568928 | 2137 (55.030) | coding (27/1527 nt) | ybcK | DLP12 prophage; putative recombinase | |||||
| * | ? | NC_000913 | 568559 = | 1911 (46.580) | 57 (1.460) | 16/252 | NT | 3.1% | coding (245/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | 568576 = | 1791 (45.750) | coding (262/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE | |||||
| * | ? | NC_000913 | 568265 = | 1707 (41.610) | 12 (0.320) | 8/244 | NT | 0.79% | intergenic (+18/‑50) | renD/emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | 568300 = | 1442 (38.050) | intergenic (+53/‑15) | renD/emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE | |||||