New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2063478	33 (1.150)	3 (0.110)	3/252	NT	9.0%	coding (990/1080 nt)	cobT	nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase
	?	NC_000913	= 2063498	29 (1.060)					coding (970/1080 nt)	cobT	nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase

TGTCGCGAAAGCTATCCGTTAAGTATAGCTTTTATCAGACTTTTCGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACGCGCGCCTTTTTCTGCCGACAGGTGAGAAGGAATGAGATACGGTT  >  NC_000913/2063339‑2063620                                                                                                                                            |                                                                                                                                               tGTCGCGAAAGCTATCCGTTAAGTATAGCTTTTATCAGACTTTTCGTTATAAACTGTTCAAATCAGAGGTCGTATTCCCCGGTAGAACAATATTACTTGCAGCAAATTCGCCCATAGTGGTGTATATAGCACACGCCGCTTCg                                                                                                                                             >  1:56129/1‑143 (MQ=255)  gTCGCGAAAGCTATCCGTTAAGTATAGCTTTTATCAGACTTTTCGTTTTTAACTGTTCGAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCga                                                                                                                                            >  2:284351/1‑143 (MQ=255)  gTCGCGAAAGCTATCCGTTAAGTATAGCTTTTATCAGACTTTTCGTTTTCAACTGTTCACATCAGAAGTCGTATTTTCTGTGTGGGGTAGCGGACAGGCATCAATTTCGCCCATGTTGTTCTATATCGCCCACGCAGCTTAga                                                                                                                                            >  2:553350/1‑143 (MQ=255)        aaaGCTATCCGTTAAGTATAGCTTTTATCAGACTTTTCGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATgg                                                                                                                                      >  1:501289/1‑143 (MQ=255)            cTATCCGTTAAGTATAGCTTTTATCAGACTTTTCGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCAt                                                                                                                                  >  1:315465/1‑143 (MQ=255)             tATCCGTTAAGTATAGCTTTTATCAGACTTTTCGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATc                                                                                                                                 >  1:390032/1‑143 (MQ=255)             tATCCGTTAAGTATAGCTTTTATCAGACTTTTCGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAAAAATATTACTGACAGCAAGTTCGCCGCTGTTGTTGGATATCTCACAGGCAACTTCGATGATGGCCATc                                                                                                                                 >  2:218680/1‑143 (MQ=255)                  gTTAAGTATAGCTTTTATCAGACTTTTCGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCag                                                                                                                            >  1:179323/1‑143 (MQ=255)                  gTTAAGTATAGCTTTTATCAGACTTTTCGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCag                                                                                                                            <  1:199786/143‑1 (MQ=255)                  gTTAAGTATAGCTTTTATCAGACTTTTCGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCag                                                                                                                            >  2:535720/1‑143 (MQ=255)                          taGCTTGTATCAGACTTTTCGTTTTTACCTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGTAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTctggcgatgcccatcatcgaagctgcct                                                                                                                    <  2:398846‑M1/143‑29 (MQ=255)                            gCTGTTATCAGACTTTTCGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCa                                                                                                                  <  2:427444/143‑1 (MQ=255)                              ttttATCAGACTTTTCGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACt                                                                                                                >  1:459102/1‑143 (MQ=255)                                     aGACTTTTCGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCa                                                                                                         >  1:46733/1‑143 (MQ=255)                                     aGACTTTTCGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCa                                                                                                         >  2:102546/1‑143 (MQ=255)                                         ttttCGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGCTGGGCATCGCCCGAGCTGCGCCACTCCCCTCACCtt                                                                                                     >  1:100868/1‑142 (MQ=255)                                             cGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACg                                                                                                 <  1:95486/143‑1 (MQ=255)                                                ttttAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCCCAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGTCCCTCTCCCCTCTCCTAAACTCAt                                                                                              >  1:269128/1‑143 (MQ=255)                                                         ttCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCCGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATAtt                                                                                     >  1:132855/1‑143 (MQ=255)                                                            aaaTCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTgag                                                                                  <  2:479254/143‑1 (MQ=255)                                                                     gTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTc                                                                         >  1:161722/1‑143 (MQ=255)                                                                          aTTCCCCGGTAGAACAATATTACTGGCAGCAAGTGCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGACATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGcc                                                                    <  2:447764/143‑1 (MQ=255)                                                                              cccGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCaa                                                                >  1:363136/1‑143 (MQ=255)                                                                                cGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAAt                                                              <  2:46733/143‑1 (MQ=255)                                                                                  gTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTctggcgatgcccatcatcgaagctgc                                                                                                                      <  2:256056‑M1/85‑27 (MQ=255)                                                                                  gTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTctggcgatgcccatcatcgaagctgc                                                                                                                      >  1:256056‑M1/1‑59 (MQ=255)                                                                                      aaCAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTACCATAACCTAACAGCATCGCCAGATTGAGATAAGGCTCCAGCCCACAATGCgaga                                                        >  2:551655/1‑143 (MQ=255)                                                                                         aaTATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAgcg                                                     <  1:515873/143‑1 (MQ=255)                                                                                                 tGGCAGCAAGTCCGGCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATAcgc                                             <  1:229408/143‑1 (MQ=255)                                                                                                   gcagcaAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCAAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCAAATTCAGATAAGGCCCCCGCCCCAAATGCGAGCGCGCTCTAcgggc                                           >  2:100957/1‑143 (MQ=255)                                                                                                     agcaAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAATCGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACgcgcgc                                         <  1:373444/143‑1 (MQ=255)                                                                                                               cccATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACGCGCGCCTTTTTCTGc                               <  1:284351/143‑1 (MQ=255)                                                                                                                       gttgtATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTGAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACGCGCGCCTTTTTCTGCCGACAGGt                       <  2:459102/143‑1 (MQ=255)                                                                                                                       gttgtATAGCGCCCGGGCAGCTTCGAGGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTGAACGCATCGCCATACCGAGAGAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACGCGCGCCTTTTTCTGCCGACAGGt                       <  1:133170/143‑1 (MQ=255)                                                                                                                       ggtgtATATCGCACAGGCAGCTTCGATGATGTGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACGCGCGCCTTTTTCTGCCGACAGGt                       <  1:450798/141‑1 (MQ=255)                                                                                                                                cGCACCGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAATCGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACGCGCGCCTTTTTCTGCCGACAGGTGAGAAGGaa              <  2:501289/143‑1 (MQ=255)                                                                                                                                   acaGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACGCGCGCCTTTTTCTGCCGACAGGTGAGAAGGAATga           <  1:305707/143‑1 (MQ=255)                                                                                                                                    caagCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACGCGCGCCTTTTTCTGCCGACAGGTGAGAAGGAATgag          <  1:125730/140‑1 (MQ=255)                                                                                                                                     tgtctgCTTCGATGATGGGCATCGCCAGAGCTGCGCCCCTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACGCGCGCCTTTTTCTGCCGACAGGTGAGAAGGAATgaga         <  2:416430/138‑1 (MQ=255)                                                                                                                                     aGGCAGCTTCGATGATGGGCATCGCCAGagctgcctgtgcgatatacaacaacatgggcgaacttactgccagtaatattgttctaccggggaatacgacttctgatttgaacaggtaaaaacgaaaagtctgatacaagcta         <  2:398846‑M2/143‑116 (MQ=255)                                                                                                                                     aGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACGCGCGCCTTTTTCTGCCGACAGGTGAGAAGGAATgaga         >  1:423800/1‑143 (MQ=255)                                                                                                                                       gCAGCTTCGATGATGGGCATCGCCAGagctgcctgtgcgatatacaacaacatgggcgaacttgctgccagtaatattgttctac                                                                 <  2:256056‑M2/85‑60 (MQ=255)                                                                                                                                       gCAGCTTCGATGATGGGCATCGCCAGagctgcctgtgcgatatacaacaacatgggcgaacttgctgccagtaatattgttctac                                                                 >  1:256056‑M2/1‑26 (MQ=255)                                                                                                                                            ttCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCGCCATGTTGAGATAGGGGTCCAGCCCCAAACGCGAGAGCGCTATACGCGCGCCTTTTTCTGCCGACAGGTCAGGAGGAATGAGATGCGGtg  >  1:450519/1‑142 (MQ=255)                                                                                                                                            |                                                                                                                                               TGTCGCGAAAGCTATCCGTTAAGTATAGCTTTTATCAGACTTTTCGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACGCGCGCCTTTTTCTGCCGACAGGTGAGAAGGAATGAGATACGGTT  >  NC_000913/2063339‑2063620

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.