New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2063478	33 (1.150)	3 (0.110)	3/252	NT	9.0%	coding (990/1080 nt)	cobT	nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase
	?	NC_000913	= 2063498	29 (1.060)					coding (970/1080 nt)	cobT	nicotinate‑nucleotide‑‑dimethylbenzimidazole phosphoribosyltransferase

GTTAAGTATAGCTTTTATCAGACTTTTCGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACGCGCGCCTTTTTCTGCCGACAGGTGAGAAGGAATGAGATACGGTTTGATCGCAGGAGACATCTG  >  NC_000913/2063356‑2063639                                                                                                                                               |                                                                                                                                              gTTAAGTATAGCTTTTATCAGACTTTTCGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCag                                                                                                                                               >  2:535720/1‑143 (MQ=255) gTTAAGTATAGCTTTTATCAGACTTTTCGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCag                                                                                                                                               >  1:179323/1‑143 (MQ=255) gTTAAGTATAGCTTTTATCAGACTTTTCGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCag                                                                                                                                               <  1:199786/143‑1 (MQ=255)           gCTGTTATCAGACTTTTCGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCa                                                                                                                                     <  2:427444/143‑1 (MQ=255)             ttttATCAGACTTTTCGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACt                                                                                                                                   >  1:459102/1‑143 (MQ=255)                    aGACTTTTCGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCa                                                                                                                            >  1:46733/1‑143 (MQ=255)                    aGACTTTTCGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCa                                                                                                                            >  2:102546/1‑143 (MQ=255)                        ttttCGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGCTGGGCATCGCCCGAGCTGCGCCACTCCCCTCACCtt                                                                                                                        >  1:100868/1‑142 (MQ=255)                            cGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACg                                                                                                                    <  1:95486/143‑1 (MQ=255)                               ttttAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCCCAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGTCCCTCTCCCCTCTCCTAAACTCAt                                                                                                                 >  1:269128/1‑143 (MQ=255)                                        ttCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCCGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATAtt                                                                                                        >  1:132855/1‑143 (MQ=255)                                           aaaTCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTgag                                                                                                     <  2:479254/143‑1 (MQ=255)                                                    gTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTc                                                                                            >  1:161722/1‑143 (MQ=255)                                                         aTTCCCCGGTAGAACAATATTACTGGCAGCAAGTGCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGACATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGcc                                                                                       <  2:447764/143‑1 (MQ=255)                                                             cccGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCaa                                                                                   >  1:363136/1‑143 (MQ=255)                                                               cGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAAt                                                                                 <  2:46733/143‑1 (MQ=255)                                                                     aaCAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTACCATAACCTAACAGCATCGCCAGATTGAGATAAGGCTCCAGCCCACAATGCgaga                                                                           >  2:551655/1‑143 (MQ=255)                                                                        aaTATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAgcg                                                                        <  1:515873/143‑1 (MQ=255)                                                                                tGGCAGCAAGTCCGGCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATAcgc                                                                <  1:229408/143‑1 (MQ=255)                                                                                  gcagcaAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCAAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCAAATTCAGATAAGGCCCCCGCCCCAAATGCGAGCGCGCTCTAcgggc                                                              >  2:100957/1‑143 (MQ=255)                                                                                    agcaAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAATCGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACgcgcgc                                                            <  1:373444/143‑1 (MQ=255)                                                                                              cccATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACGCGCGCCTTTTTCTGc                                                  <  1:284351/143‑1 (MQ=255)                                                                                                      gttgtATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTGAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACGCGCGCCTTTTTCTGCCGACAGGt                                          <  2:459102/143‑1 (MQ=255)                                                                                                      gttgtATAGCGCCCGGGCAGCTTCGAGGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTGAACGCATCGCCATACCGAGAGAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACGCGCGCCTTTTTCTGCCGACAGGt                                          <  1:133170/143‑1 (MQ=255)                                                                                                      ggtgtATATCGCACAGGCAGCTTCGATGATGTGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACGCGCGCCTTTTTCTGCCGACAGGt                                          <  1:450798/141‑1 (MQ=255)                                                                                                               cGCACCGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAATCGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACGCGCGCCTTTTTCTGCCGACAGGTGAGAAGGaa                                 <  2:501289/143‑1 (MQ=255)                                                                                                                  acaGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACGCGCGCCTTTTTCTGCCGACAGGTGAGAAGGAATga                              <  1:305707/143‑1 (MQ=255)                                                                                                                   caagCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACGCGCGCCTTTTTCTGCCGACAGGTGAGAAGGAATgag                             <  1:125730/140‑1 (MQ=255)                                                                                                                    tgtctgCTTCGATGATGGGCATCGCCAGAGCTGCGCCCCTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACGCGCGCCTTTTTCTGCCGACAGGTGAGAAGGAATgaga                            <  2:416430/138‑1 (MQ=255)                                                                                                                    aGGCAGCTTCGATGATGGGCATCGCCAGagctgcctgtgcgatatacaacaacatgggcgaacttactgccagtaatattgttctaccggggaatacgacttctgatttgaacaggtaaaaacgaaaagtctgatacaagcta                            <  2:398846‑M2/143‑116 (MQ=255)                                                                                                                    aGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACGCGCGCCTTTTTCTGCCGACAGGTGAGAAGGAATgaga                            >  1:423800/1‑143 (MQ=255)                                                                                                                      gCAGCTTCGATGATGGGCATCGCCAGagctgcctgtgcgatatacaacaacatgggcgaacttgctgccagtaatattgttctac                                                                                    <  2:256056‑M2/85‑60 (MQ=255)                                                                                                                      gCAGCTTCGATGATGGGCATCGCCAGagctgcctgtgcgatatacaacaacatgggcgaacttgctgccagtaatattgttctac                                                                                    >  1:256056‑M2/1‑26 (MQ=255)                                                                                                                           ttCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCGCCATGTTGAGATAGGGGTCCAGCCCCAAACGCGAGAGCGCTATACGCGCGCCTTTTTCTGCCGACAGGTCAGGAGGAATGAGATGCGGtg                     >  1:450519/1‑142 (MQ=255)                                                                                                                              gatggtGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACGCGCGCCTTTTTCTGCCGACAGGTGAGAAGGAATGAGATACGGTTTGa                  <  2:315465/143‑1 (MQ=255)                                                                                                                                         tCGCCAGAGCTGCGCCACCCCCCCCCCCTAAACGCAGCGCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACGCGCGCCCATTGCGGCCTACATGTGAGAGGGAATGAGATACGGTTTGATCGCAGGAGAc       <  2:405903/143‑1 (MQ=255)                                                                                                                                              agagCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACGCGCGCCTTTTTCTGCCGACAGGTGAGAAGGAATGAGATACGGTTTGATCGCAGGAGACATCTg  >  1:265960/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                              GTTAAGTATAGCTTTTATCAGACTTTTCGTTTTTAACTGTTCAAATCAGAAGTCGTATTCCCCGGTAGAACAATATTACTGGCAGCAAGTTCGCCCATGTTGTTGTATATCGCACAGGCAGCTTCGATGATGGGCATCGCCAGAGCTGCGCCACTCCCCTCACCTAAACGCATCTCCATATTGAGATAAGGCTCCAGCCCCAAATGCGAGAGCGCTATACGCGCGCCTTTTTCTGCCGACAGGTGAGAAGGAATGAGATACGGTTTGATCGCAGGAGACATCTG  >  NC_000913/2063356‑2063639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.