New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 216058	NA (NA)	4 (0.150)	4/250	NT	NA	noncoding (32/34 nt)	other	REP16a
	?	NC_000913	= 1068451	NA (NA)					noncoding (2/34 nt)	other	REP92b

GCAGGGAAATTTTACCCCAACCAGGATTGCAGTAGTTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTATCACCGGGTCAAACCAA  >  NC_000913/215932‑216195                                                                                                                               |                                                                                                                                          gCAGGGAAATTTTACCCCAACCAGGATTGCAGTAGTTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGttt                                                                                                                           >  2:70871/1‑143 (MQ=255)      gAAATTTTACCCCAACCAGGATTGCAGTAGTTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTAcgcc                                                                                                                      >  1:392379/1‑143 (MQ=255)       aaaTTTTACCCCAACCAGGATTGCAGTAGTTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCCACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTAcgccg                                                                                                                     >  1:21135/1‑143 (MQ=255)         aTTTTACGCCAACCTGGATTGCAGTAGTTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGgccggatgcggcgtaaacgcctta                                                                                                                   <  2:504757‑M1/143‑25 (MQ=255)                              cAGTAGTTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGc                                                                                              >  2:101147/1‑143 (MQ=255)                                  actttGGGGCAGTAACCCGGCGTGGGAGAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGa                                                                                          <  2:119391/141‑1 (MQ=255)                                        gggCAGCAACCCGTCGGGATACAGAACCAAACGCAAAACAGGCCAGAAGGAGATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTGACGCCGCATCCGGCAATGGTGCTCAACGCCTGCTGCGAc                                                                                    <  2:530233/143‑1 (MQ=37)                                              tAACCCGGCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGgc                                                                              <  1:279174/143‑1 (MQ=255)                                                aCCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGgcgc                                                                            <  1:247042/143‑1 (MQ=255)                                                  ccGTCTTGAGACAGAAACAAACGCAAACCAGAAGAGAAGAAGTTATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTAAACGCCTGATGCGAAGCTGGcgcga                                                                          >  1:390964/1‑142 (MQ=25)                                                  ccGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGcgcga                                                                          >  2:381765/1‑142 (MQ=255)                                                              aGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCGTCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGGGCGGCGTATCATGCCt                                                              >  1:40721/1‑143 (MQ=255)                                                                aaacaaacGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTATGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGCTACAACGCTGCCGCGCCCTAACATGCCTAc                                                            >  2:30135/1‑143 (MQ=37)                                                                    aaacGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAcc                                                        >  1:499003/1‑143 (MQ=255)                                                                       cGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGgccggatgcggcgtaaacgcctt                                                                                                                    >  1:167899‑M1/1‑57 (MQ=255)                                                                       cGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGgccggatgcggcgtaaacgcctt                                                                                                                    <  2:167899‑M1/80‑24 (MQ=255)                                                                        tcAAAACAGGCCACGAGGATATATTTCAACATGTTGAATTTGCACGTTCGTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGTCGCTGGCGCGTCTTATCATGCCTACAAcccccc                                                    <  2:166543/142‑1 (MQ=25)                                                                            aaCAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCAt                                                <  1:101147/143‑1 (MQ=255)                                                                                             tatTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAg                               <  2:21135/143‑1 (MQ=255)                                                                                              atTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg                                                                                                              >  2:465797/1‑63 (MQ=255)                                                                                              atTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg                                                                                                              <  1:465797/63‑1 (MQ=255)                                                                                                ttCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCa                            >  1:455991/1‑143 (MQ=255)                                                                                                    aCATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCAGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTa                        <  1:213873/143‑1 (MQ=255)                                                                                                       ttttGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACtt                     >  1:301951/1‑143 (MQ=255)                                                                                                       tgttGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATCCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACtt                     <  1:540290/141‑1 (MQ=255)                                                                                                       gcttGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACtt                     <  1:27384/141‑1 (MQ=255)                                                                                                        tgtGAATGTGCGCGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCAGCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACttt                    <  1:528350/141‑1 (MQ=255)                                                                                                        tctGAATTTGCACGTTTTCGGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACttt                    <  1:150924/141‑1 (MQ=255)                                                                                                            aaTTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTATCa                >  1:391503/1‑143 (MQ=255)                                                                                                                        ttttGTAGgccggataaggcgtttacgccgcatccggcctacaaaacagtgcaaattcaatatattgcaatcttctggtaggcctgataagcatcgcgcatcaggcaagcttacatttgtcatcagtatcaaccaccgggtaa    >  1:227903‑M1/1‑8 (MQ=255)                                                                                                                          ttGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTAACATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTATCACCGGGTCAAACcaa  <  1:80302/143‑1 (MQ=255)                                                                                                                               |                                                                                                                                          GCAGGGAAATTTTACCCCAACCAGGATTGCAGTAGTTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGGCGGATAAGGCATTTACTTTATCACCGGGTCAAACCAA  >  NC_000913/215932‑216195

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.