New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 216058	NA (NA)	4 (0.150)	4/250	NT	NA	noncoding (32/34 nt)	other	REP16a
	?	NC_000913	= 1068451	NA (NA)					noncoding (2/34 nt)	other	REP92b

CCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTG‑CCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTG‑GCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCATTGAGTAAAATCGCGCCAA  >  NC_000913/1068310‑1068593                                                                                                                                               |                                                                                                                                                ccgccgGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTG‑CCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                                                                                                                                <  1:140341/143‑1 (MQ=255)  cgccgGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTG‑CCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAt                                                                                                                                               <  1:366918/143‑1 (MQ=255)        ttACCCGGTGGTTGATACTGATGACAAATGTAAGCTTG‑CCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCctacaaaa                                                                                                                                         >  1:227903‑M2/1‑135 (MQ=255)            ccGGTGGTTGATACTGATGACAAATGTAAGCTTG‑CCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCg                                                                                                                                     >  1:189751/1‑143 (MQ=255)            ccGGTGGTTGATACTGAGCACAAAT‑TGCCATTGTCTTGATGCTCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCg                                                                                                                                     <  1:236774/143‑1 (MQ=17)               gtggtTGATACTGATGACAATTTTTAGCTTG‑CCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTGGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTAc                                                                                                                                  <  1:312061/143‑1 (MQ=21)               gtggtTGATACTGATGACAAATGTAGGCTTG‑CCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGGTAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTAc                                                                                                                                  <  2:411146/143‑1 (MQ=255)                     ggtACTGATGACAAATGTAAGCTTG‑CCTGAGGCGCGATGCTTATCAGGCCTGCCAGGAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTc                                                                                                                            <  2:79481/141‑1 (MQ=255)                              gaCAAATGTAAGCTTG‑CCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACACTGCGTACGTTGTCAACAAGCTg                                                                                                                   >  2:202721/1‑143 (MQ=255)                               aCAAATGTAAGCTTG‑CCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGc                                                                                                                  >  2:347452/1‑143 (MQ=255)                               aCAAAGGTAAGCTTG‑CCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGc                                                                                                                  <  1:393049/143‑1 (MQ=255)                                      tgaGCGTG‑CCGCATGCGCGAGGGTTATCAGGCCTACCAGGAGATTGCAATATATTGAGTTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTTAACAATCTGCAccgccg                                                                                                           <  2:139087/141‑1 (MQ=21)                                                ctgctgCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCAcg                                                                                                  >  2:530291/1‑143 (MQ=255)                                                                aTCAGGCCTTCCAGAAGATTGCAATATATTGCATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTAt                                                                                  <  2:323694/143‑1 (MQ=255)                                                                 tCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCCGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTaag                                                                                 >  2:428300/1‑141 (MQ=255)                                                                   aGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCGGGATAAGGCGTTTACGCCGAATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTtttctgtttctgac                                                                               >  2:376389/1‑141 (MQ=255)                                                                           cAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCAGTTTTCTGTTTATGGATCCtcatg                                                                       >  2:318625/1‑143 (MQ=255)                                                                                gaTTGCACTATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGaacaa                                                                  <  1:569336/143‑1 (MQ=255)                                                                                gaTTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAGTCTGCACCGCCGGTAACCCCGGCGGTGTTCCGTCTCTGGCTCCCCAGGaacac                                                                  >  2:386726/1‑142 (MQ=25)                                                                                                aTTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTG‑GCGGTGGAAc                                                 <  2:4544/143‑1 (MQ=255)                                                                                                     cACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTG‑GCGGTGGAACGTcaa                                            >  2:351239/1‑143 (MQ=255)                                                                                                     cACGGTTTTGTACGACGGAGAAGGCGTCTACGCCGCATCCGGCATGAACAATGCGTACGTCGTCAACAAGCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTG‑GCGGTGGAACGTcaa                                            <  1:309174/143‑1 (MQ=38)                                                                                                        tGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTG‑GCGGTGGAACGTcaacca                                         >  1:355546/1‑143 (MQ=255)                                                                                                                  gCCGGATAAGGCGTTTACGCCGCATGCGGCATGAACAATGCGTACGATGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTATTATGATGATGGCGCCTGATGAACAA‑TCGTGTTCGGTGGCAGGTCAAGCAACTGTCTgag                               >  2:249684/1‑141 (MQ=19)                                                                                                                  gCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTG‑GCGGTGGAACGTCAACCAACTTTCGGca                               >  2:348342/1‑142 (MQ=255)                                                                                                                        tAAGGCGTTTACGCCGCATCCGGCctacaaaaaacgtgcaaattcaaaatgttgaaatatatccttctggcctgttttgcgtttgtttctgtctcaagacgggttactgccccaaactactgcaatccaggttggcgtaaaat                          <  2:504757‑M2/143‑120 (MQ=255)                                                                                                                         aaGGCGTTTACGCCGCATCCGGCctacaaaaaacgtgcaaattcaaaatgttgaaatatatccttctggcctgttttgcg                                                                                        >  1:167899‑M2/1‑23 (MQ=255)                                                                                                                         aaGGCGTTTACGCCGCATCCGGCctacaaaaaacgtgcaaattcaaaatgttgaaatatatccttctggcctgttttgcg                                                                                        <  2:167899‑M2/80‑58 (MQ=255)                                                                                                                            gCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCCCCTGATGAACAACTTCTG‑GCTGTGGAACGTCACCCAACTTTCTGCTTAACAACGCa                     >  2:169142/1‑143 (MQ=255)                                                                                                                                ttACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTG‑GCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCATTGa                 <  2:427892/143‑1 (MQ=255)                                                                                                                                    gccgcATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTG‑GCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCATTGAGaaa             >  1:331377/1‑143 (MQ=255)                                                                                                                                    gccgcATCCGGCATGAACAATACGTACGTTGTCAACAATCTGCACCGCCGGTGACCCCGGCGGATTTATGTTTATGGCTCCTGATGAACAACTTCTG‑ACGGAGGAACGGCAACCAACGTTCTGCCTAACAACGCATTGAGTaa             >  2:351559/1‑143 (MQ=255)                                                                                                                                       gcATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTG‑GCGGTGGCACGCCCCCCCTCTTTCTGCTCAACAACGCATTAAGTAAAAt          >  1:349713/1‑143 (MQ=255)                                                                                                                                            cGGCATGAACAAGGCGTACGGTGGCAACGATCTGCGCCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTG‑GCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCATTGAGTAAAATCgcgc     <  2:69003/143‑1 (MQ=255)                                                                                                                                               cATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTG‑GCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCATTGAGTAAAATCGCGCCaa  <  2:189751/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                CCGCCGGTTACCCGGTGGTTGATACTGATGACAAATGTAAGCTTG‑CCTGATGCGCGATGCTTATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTG‑GCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCATTGAGTAAAATCGCGCCAA  >  NC_000913/1068310‑1068593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.