New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 354605	NA (NA)	5 (0.180)	4/250	NT	NA	noncoding (6/28 nt)	other	REPt26a
	?	NC_000913	= 354653	NA (NA)					noncoding (13/36 nt)	other	REP26b

AAAAACGCGATCCGGAAAAATGCTGCGCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACG  >  NC_000913/354463‑354746                                                                                                                                               |                                                                                                                                              aaaaaCGCGATCCGGAAAAATGCTGCGCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGAt                                                                                                                                               >  1:370214/1‑143 (MQ=255)  caaacGCGATCCGGAAAAGTGCTGCGCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCACCAGAAGATGGAAGAGTAGGTTATTGTCGGATg                                                                                                                                              <  2:498163‑M1/142‑2 (MQ=255)  aaaaCGCGATCGGGAACGATGCTGCGCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGTTCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATg                                                                                                                                              <  1:30266‑M1/143‑2 (MQ=255)             cGGAAAAATGCTGCGCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGt                                                                                                                                   >  1:463495/1‑143 (MQ=255)                 aaacTGCTGCGCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCAt                                                                                                                               <  1:85598/143‑1 (MQ=255)                                  gATCCAGGCGCTTTGCGAAGGACGCGCTCCCGGAGACCTGACGACCATTGATGCTCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATgcgtcgcatcaggcatcggcacacagtgccgga                                                                                                              <  1:84178‑M1/143‑34 (MQ=255)                                  gATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATgcgtcgcatcaggcatcggcacacagtgccgga                                                                                                              <  1:360815‑M1/143‑34 (MQ=255)                                      cAGGGGATTCGCGACGGACGCGATCCGGGGGAGGTGACGAGCATGGATGATCCTGCGTCGGTGGATCACATCCGCCAGGCGGGGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGcc                                                                                                          <  1:298240/143‑1 (MQ=255)                                               tGCGAAGGACGCGATCCTGGAGATCTGACGACAATTGATGGTCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATgcgtcgcatcaggcatcggcacacagtgccggatgcaccgcgcgac                                                                                                 <  2:113621‑M1/143‑47 (MQ=255)                                                gCGAGGGACGCGATCCTGGAGACCTGACGAGCGTTGAGGATGCGGCGGCGTGGGATCAGAGCCGCCAGGCGATGGGAGAGGAGGTTATGGTCGGAGGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACG                                                                                                >  2:127655‑M2/1‑143 (MQ=255)                                                 gggaggaCGCGAGCCGGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATgcgtcgcatcaggcatcggcacacagtgccggatgcaccgcgcgacgc                                                                                               <  2:302366‑M1/140‑49 (MQ=255)                                                  gAATGACTCGATACTGGAGATCTGACGACAAGGGATGATGCTGCGTCGGTGGAGCAGATCCGCGAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCt                                                                                              <  1:215795/143‑1 (MQ=255)                                                   aaGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTg                                                                                             >  2:158145/1‑143 (MQ=255)                                                    aGGCCGCGCGCCGGGACAGCTGACGACCAGTTATGATCCCGCGTTGTTGGGTCGGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATgcgtcgcatcaggcatcggcacacagtgccggatgcaccgcgcgacgcatc                                                                                            <  2:261376‑M1/143‑52 (MQ=255)                                                     ggACGCGATCCTGGACATCTGCCGACCATTGATGATCCTGCGGCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGAc                                                                                           <  2:82931/143‑1 (MQ=255)                                                         gcgATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGACGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGCTGGCTCATGCGTCGCTGACGCGt                                                                                       >  1:325117/1‑143 (MQ=255)                                                          cgATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGtt                                                                                      <  2:370214/143‑1 (MQ=255)                                                               cTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTCGGTTATTGTCGGATGCGTCGCGCGGTGCATCNGGCGCTGTGTGGAGATGCCTGATGCGACGCCGAcgcggtgtgta                                                                                 >  2:266571/1‑136 (MQ=255)                                                                tGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCa                                                                                >  1:476762/1‑143 (MQ=255)                                                                   agaTCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGc                                                                             >  1:123214/1‑143 (MQ=255)                                                                     aTCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCt                                                                           >  1:118387/1‑143 (MQ=255)                                                                                   gatgatCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTCCGGAcccgccccg                                                             >  1:90138/1‑136 (MQ=255)                                                                                       gtcgcgCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAgg                                                         <  1:179643/138‑1 (MQ=255)                                                                                               tcgtTGGATCAGATCCGCCAGGCGATGGAAGAGGATGTTATTGTCGGATGTATTGTGGGTAGCAGTCAGAACTAATTGCATATTCCTGATACTACGCTTACGCGATTTATCATGCCTACGGACCTAAACCGTAGGTCCGATaa                                                 >  2:253522/1‑143 (MQ=255)                                                                                                cgtGGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAg                                                <  1:550001/143‑1 (MQ=255)                                                                                                     gATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCt                                           >  2:378863/1‑143 (MQ=255)                                                                                                           aTCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTc                                     <  1:355867/143‑1 (MQ=255)                                                                                                             ccGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGAGACACTGACGCGTTTTATCATGCCTACGGACGTGAACGGTAGGTCGGATAAGGCGGTcgcgcacc                                   >  1:569143/1‑139 (MQ=255)                                                                                                                     cggttgAAGTGTGGGGTATTGTCGGATGCGTCGCGCGGTGCTTCCGGCACTGTCTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCCTGCCTTCGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGaca                           <  2:191046/138‑1 (MQ=38)                                                                                                                     cGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGaca                           <  1:182142/143‑1 (MQ=255)                                                                                                                       aTGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACAcc                         >  1:473130/1‑143 (MQ=255)                                                                                                                                   gTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGTCACCCTGCTCCGATGc             >  1:181806/1‑143 (MQ=255)                                                                                                                                     gacggTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCt           <  1:167333/139‑1 (MQ=255)                                                                                                                                        tGTCGGAGGCGTCGCGCGGTGCAACCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGAt        <  1:234901/143‑1 (MQ=255)                                                                                                                                          tCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGc      >  2:494952/1‑143 (MQ=255)                                                                                                                                             gATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCatccgacaataacctactcttccatcgcctggcggatccgacccaacaacgcgggatcataactggtcgtcagctgtcccggcgcgcggcct   <  2:261376‑M2/143‑93 (MQ=255)                                                                                                                                              aTGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACg  <  1:57796/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                              AAAAACGCGATCCGGAAAAATGCTGCGCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACG  >  NC_000913/354463‑354746

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.