New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2894073 =	23 (0.800)	3 (0.110)	3/256	NT	11.9%	coding (155/261 nt)	ygcO	putative 4Fe‑4S cluster‑containing protein
	?	NC_000913	2894099 =	22 (0.790)					coding (181/261 nt)	ygcO	putative 4Fe‑4S cluster‑containing protein

GCCGCACATTGTTCCGGCTGACTCCGTTGAGCGCCAGACGGCAGAACGGTTGATTAACGCCTGTCCGGCAGGTCTTTTTTCGCTCACACCGGAAGGTAACTTACGTATTGACTATCGCAGTTGCCTGGAGTGTGGCACCTGCCGTTTGCTGTGCGACGAATCAACACTACAACAGTGGCGCTATCCGCCTTCCGGATTCGGCATCACCTACCGCTTTGGATAAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCT  >  NC_000913/2893957‑2894237                                                                                                                                               |                                                                                                                                           gccgcACATTGTTCCGGCTGACTCCGTTGAGCGCCAGACGGCAGAACGGTTGATTAACGCCTGTCCGGCAGGTCTTTTTTCGCTCACACCGGAAGGTAACTTACGTATTGACTATCGCAGTTCCCTGGAGTGTGGCACCTGcc                                                                                                                                            >  2:278269/1‑143 (MQ=255)     gtgtaggaggggcataaagtatccttgttattgatccaaagcggtaggtgatgccgaatccggaaggcggagagcggcactgttgtagtgttgattcgtcgcacagcaaacgGCAGTTGCCTGGAGTGTGGCACCTGCCGttt                                                                                                                                        >  2:213222‑M1/113‑143 (MQ=255)          tGTTCCGGCTGACTCCGTTGAGCGCCAGACGGCAGAACGGTTGATTAACGCCTGCCCGGCAGGTCTTTTTTCGCTCACACCGGAAGGTAACTTACGTATTGACTATCGCAGTTGCCTGGAGTGTGGCACCTGCCGTTTGCtgt                                                                                                                                   <  1:550877/143‑1 (MQ=255)            ttCCGGCTGACTCCGTTGAGCGCCAGACGGCAGAACGGTTGATTAACGCCTGTCCGGCAGGTCTTTTTTCGCTCACACCGGAAGGTAACTTACGTATTGACTATCGCAGTTGCCTGGAGTGTGGCACCTGCCGTTTGCTGTGc                                                                                                                                 >  2:422381/1‑143 (MQ=255)                ggCGGACGCCGTTGAGCGCCAGACGGCAGAACGGTTGATTGACGCCGCTCCGGCAGGTCTTTTTTCGCTCACACCGGAAGGTAACTTACGTATTGACTATCGCAGTTGCCTGGAGTGTGGCACCTGCCGTTTGCTGTGcgacg                                                                                                                             <  2:443970/143‑1 (MQ=255)                    gACTCCGTTGAGCGCCAGACGGCAGAACGGTTGATTAACGCCTGTCCGGCAGGTCTTTTTTCGCTCACACCGGAAGGTAACTTACGTATTGACGATCGCAGTTGCCTGGAGTGTGGCACCTGCCGTTTGCTGTGCGACGAATc                                                                                                                         <  2:515441/143‑1 (MQ=255)                      cTCCGTTGAGCGCCAGACGGCAGAACGGTTGATTAACGCCTGTCCGGCAGGTCTTTTTTCGCTCACACCGGAAGGTAACTTACGTATTGACTATCGCAGTTGCCTGGCGCGGGGCCCCTGCCGGTTGCTGCGCCCCGAATCaa                                                                                                                       >  2:511673/1‑143 (MQ=255)                      cTCCGTTGAGCGCCAGACGGCAGAACGGTTGATTAACGCCTGTCCGGCAGGTCTTTTTTCGCTCACACCGGAAGGTAACTTACGTATTGACTATCGCAGTTGCCTGGAGTGTGGCACCTGCCGTTTGCTGTGCGACGAATCaa                                                                                                                       >  1:455692/1‑143 (MQ=255)                       tCCGTTGCGCGCCAGACGGCAGAACGGTTGATTAACGCCTGTCCGGCAGGTCTTTTTTCGCTCACACCGGAAGGTAACTTACGTATTGACTATCGCAGTTGCCTGGAGTGTGGCACCTGCCGTTTGCTGTGCGACGAATCAac                                                                                                                      <  2:13392/143‑1 (MQ=255)                           gataGCGCCAGACGGCAGAACGGTTGATTAACGCCTGTCCGGCAGGTCTTTTTTCGCTCACACCGGAAGGTAACTTACGTATTGACTATCGCAGTTGCCTGGAGTGTGGCACCTGCCGTTTGCTGTGCGACGAATCAACACTa                                                                                                                  >  2:69982/4‑143 (MQ=255)                              aGCGCCAGACGGCAGAACGGTTGATTAACGCCTGTCCGGCAGGTCTTTTTTCGCTCACACCGGAAGGTAACTTACGTATTGACTATCGCAGTTGCCTGGAGTGTGGCACCTGCCGTTTGCTGTGCGACGAATCAACACTacaa                                                                                                               >  2:504047/1‑143 (MQ=255)                                            gAACGGTTGATTAGCGCATGTCCGGCAGGTCTTTTTTCGCTCACACCGGAAGGTAACTTACGTATTGACTATCGCAGTTGCCTGGAGTGTGGCACCTGCCGTTTGCTGTGCGACGAATCAACACTACAACAGTGGCGCTATcc                                                                                                 <  2:570038/143‑1 (MQ=255)                                              aCGGGTGGTTAACGCCTGTGCGGGAGGGCTTTTTTCGCTCACACCGGAAGGTCACTTACGTATTGACTATCGCAGTTGCCTGGAGTGTGGCACCTGCCGTTTGCTGTGCGACGAATCAACACTACAACAGTGGCGCTATCCGc                                                                                               <  2:368606/143‑1 (MQ=255)                                                     aTTAACGCCTGTCCGGCAGGTCTTTTTTGGGGCACACCGGAAGGTAACTTACGTATTGACTATCGCAGTTGCCTGGAGTGTGGCACCTGCCGTTTGCTGTGCGACGAATCAACACTACAACAGTGGCGCTAACCGCCTTCggg                                                                                        >  2:556994/1‑143 (MQ=255)                                                                  ggaaggcggatagcgccactgttgtagtgttgattcgtcgcacagcaaacgGCAGTTGCCTGGAGTGTGGCACCTGcc                                                                                                                                            >  1:230683‑M1/52‑78 (MQ=255)                                                                  ggaaggcggatagcgccactgttgtagtgttgattcgtcgcacagcaaacgGCAGTTGCCTGGAGTGTGGCACCTGcc                                                                                                                                            <  2:230683‑M1/27‑1 (MQ=255)                                                                         tCTTTTTTCGCTCACACCGGAAGGTAACTTACGTATTGACTATCGCAGTTGCCTGGAGTGTGGCACCTGCCGTTTGCTGTGCGACGAATCAACACTACAACAGTGGCGCTATCCGCCTTCCGGATTCGGCATCACCTACCGcc                                                                    >  2:169957/1‑142 (MQ=255)                                                                         tCTTTTTTCGCTCACACCGGAAGGTAACTTACGTATTGACTATCGCAGTTGCCTGGAGTGTGGCACCTGCCGTTTGCTGTGCGACGAATCAACACTACAACAGTGGCGCTATCCGCCTTCCGGATTCGGCATCACCTACCGCt                                                                    >  1:324790/1‑143 (MQ=255)                                                                            tttttCGCTCACACCGGAAGGTAACTTACGTATTGACTATCGCAGTTGCCTGGAGTGTGGCACCTGCCGTTTGCTGTGCGACGAATCAACACTACAACAGTGGCGCTATCCGCCTTCCGGATTCGGCATCAGCTACCGCTTTg                                                                 >  1:331196/1‑143 (MQ=255)                                                                                        acCGGAAGGTGACTTACTTATTGACTATCGCGGTTGCCTGGAGTGTGGCACCTGCCGTTTGCTGTGCGACGAAGCAACACTACAACAGTGGCGCTATCCGCCTTCCTGATTCGGCATCACCTACCGCTTTGGATAAAtaataa                                                     <  2:482123/143‑1 (MQ=255)                                                                                                       aCGTATTGACTATCGCAGTTGCCTGGAGTGTGGCACCTGCCGTTTGCTGTGCGACGAATCAACACTACAACAGTGGCGCTATCCGCCTTCCGGATTCGGCATCACCTACCGCTTTGGATAAATAATAAGGATAATTTATGccc                                      >  1:162904/1‑143 (MQ=255)                                                                                                                aaacggcaggtgccacactccaggcaactgcCGTTTGCTGTGCGACGAATCAACACTACAACAGTGCCGCTCTCCGCCTTCCGGATTCGGCATCACCTACCGCTTTGGATCAATAACAAGGATACTTTATGCCCCTCCTacac                             >  2:213222‑M2/32‑143 (MQ=255)                                                                                                                    ggcaggtgccacactccaggcaactgcCGTTTGCTGTGCGACGAATCAACACTACAACAGTGGCGCTATCCGCCTTcc                                                                                          <  2:230683‑M2/51‑1 (MQ=255)                                                                                                                    ggcaggtgccacactccaggcaactgcCGTTTGCTGTGCGACGAATCAACACTACAACAGTGGCGCTATCCGCCTTcc                                                                                          >  1:230683‑M2/28‑78 (MQ=255)                                                                                                                         ttGCCTGGAGTGTGGCACCTGCCGTTTGCTGTGCGACGAATCAACACTACAACAGTGGCGCTATCCGCCTTCCGGATTCGGCATCACCTACCGCTTTGGATAAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGc                    <  2:324790/143‑1 (MQ=255)                                                                                                                           gCCTGGAGTGTGGCACCTGCCGTTTGCTGTGCGACGAATCAACACTACAACAGTGGCGCTATCCGCCTTCCGGATTCGGCATCACCTACCGCTTTGGATAAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCa                  <  2:126331/143‑1 (MQ=255)                                                                                                                                 aGTGTGGCTCCTGGCGTTTGTTGTGCGACGAATCAACATTACAACAGTGGCGCTATCCGCCTTCCGGATTCGGCATCACCTACCGCTTTGGATAAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATcc            <  2:480587/143‑1 (MQ=255)                                                                                                                                 aGTGTGGCACCTGCCGTTTGCTGTGCGACGAATCAACACTACAACAGTGGCGCTATCCGCCTTCCGGATTCGGCATCGCCTACCGCTTTGGATAAATAATAAGGATAATTTACGCCCCACCTCAACCTTCTCCGCCACAATcc            >  2:519404/1‑143 (MQ=255)                                                                                                                                   tgtgGCACCTGCCGTTTGCTGTGCGACGAATCAACACTACAACAGTGGCGCTATCCGCCTTCCGGATTCGGCATCACCTACCGCTTTGGATAAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCgg          <  2:418322/143‑1 (MQ=255)                                                                                                                                       gCACCTGCCGTTTGCTGTGCGACGAATCAACACTACAACAGTGGCGCTATCCGCCTTCCGGATTCGGCATCACCTACCGCTTTGGATAAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGAt      <  1:439737/143‑1 (MQ=255)                                                                                                                                           ctgcCGTTTGCTGTGCGACGAATCAACACTACAACAGTGGCGCTATCCGCCTTCCGGATTCGGCATCACCTACCGCTTTGGATAAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATtgct  <  1:305601‑M2/139‑1 (MQ=255)                                                                                                                                               |                                                                                                                                           GCCGCACATTGTTCCGGCTGACTCCGTTGAGCGCCAGACGGCAGAACGGTTGATTAACGCCTGTCCGGCAGGTCTTTTTTCGCTCACACCGGAAGGTAACTTACGTATTGACTATCGCAGTTGCCTGGAGTGTGGCACCTGCCGTTTGCTGTGCGACGAATCAACACTACAACAGTGGCGCTATCCGCCTTCCGGATTCGGCATCACCTACCGCTTTGGATAAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCT  >  NC_000913/2893957‑2894237

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.