| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 572471 | 56 (0.920) | 20 (0.430) +TGATCTTACCCAGCAATAGTGGACACGCGGCTAA |
15/214 | 2.3 | 36.4% | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein |
| ? | NC_000913 | = 2170235 | 36 (0.590) | noncoding (65/1258 nt) | IS3 | repeat region | |||||
CAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/572332‑572471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGG < NC_000913/2170235‑2170180 |||||||||||||||||||||||||||||||||| gaatTCCGGTGACTTATGCGCTAAACGGGGACGGTCAGGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGA < 1:132366/139‑1cagCTCCGGGGACTTCTGCGCTAGACGGGGACGTTTATGCGCACATACAATCCACACGCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGA < 2:233405/140‑1 taccCCGGTGACTTCTGCGCTAAGCGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGAT < 1:862167/139‑1 gacgCCGGTGACGTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGAT < 1:347793/139‑1 aagTCCGGTGTCTGCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTGTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGAT < 2:182377/140‑1 cgcTGACTTCTGCGCTAACCGGGGACGTTTATGCGCACATACAATCCACACTCTCTTCTCCCTTCACAGATGCATACATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTAC < 2:570400/140‑1 gttACTTCTGCGCTAAACGGGGACGTTTATGCGCCCCTTCGGTCCAGACGCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCC < 2:1085418/140‑1 tggCTTCTGCGGTAAACGGGGACGTTTATGCGCACATACAATCCAAGCTCTCTGCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCA < 2:709364/140‑1 tgcCTTCTGCGCTAAACGGGGACGCTTATGCGCACATACAATCCAAACGCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCA < 1:112877/140‑1 gaaTTCTGCACTAAACGGGGGCGGATCTGCGCACATACAATCCACACTCTCTTCTCCCTTCCCAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAn < 2:94397/140‑2 acgTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGC < 2:802337/140‑1 ctgAACGGGGACGTTTATGCGCACATACAATCCCAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGA < 2:56851/140‑1 acactGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACA < 1:376629/138‑1 cgcGGACGCATATGCGCACATACACACCAAACTCGCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCGCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGC < 1:496637/140‑1 cgctcgcTTATGCGCACATACAATCCCAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGG < 2:59246/136‑1 gcgaTTATGCGCACATACAATCCAAACGCTCTTCTCCCTTCAAAGATGCAAAAATGCACCTGCAATTCTTTGCATCTAGCGTGTGACCTCTGCGGAGGGAAAGCGTGAACGGATCTTACCCAGCAATCGTCGACACGCGGCTA > 2:871722/5‑143 cggTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAA < 1:240664/140‑1 gtgTATGCGCACATACACTCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAG < 2:954116/140‑1 ttgATGCGCACATGCGACCCGACCGCTCCGCTCCCTTCACAGATGCAGAAATGCACCTGCAATGCTTTGCATCTATCGTTTGACCTTTGCCGAGGGGAAGTGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT < 1:229002/140‑1 catacGCGCACATACAATCCACACTCTCTTCTCCCTTCACAGATGCGGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT < 2:18992/138‑1 tacgccCACCTACTATCCTAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGA < 2:314574/137‑1 tacGCGCACATACAATCCAAACACTCTTCTCCCTTCACAGATGCAGAAATGCACCTACAATTCTTTTCATCTAGCGTCGGACTTCTGCGGGCGTGAAGCGTGAACTGAACTTACCCAGCAATACTGGACCCGCGGCTAAGTGA > 2:1122344/4‑143 taaGCGCACATACAATCCAAACTCTCTTCGCCCGTCACAGATGCCGTATTGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGA < 2:180668/140‑1 GCGCACACACAGTCCAGACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCACTTCTTTGCATCTACCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCACTAGTGGACGCGCGGCTACGTGAGTC > 2:801133/1‑143 GCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCAa > 1:164269/1‑142 ATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCCCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAGTAGGGGACCAGCGGCTACGTGAGTCAagtct > 2:778983/1‑138 ACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTCGCGGTTGCCCTCTGCGGAGGGGAAGCGTGAACTCATCTTACCCAGCAATAGTGGCCACGCGGCTAAGTACGTCACCTCTca > 2:92197/1‑141 TCCAAACTCTATTCTCCCTTCACAGATGCAGAAATGGACCTGCAATACTTTGCATCTAGCGTTTGACATCTGCGGAGGGGACGCGTGACCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAATGAGTAACCTCTGcgtca > 1:489323/1‑138 AAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAG < 1:630287/143‑1 TCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACT < 1:244632/143‑1 ctCTTCACAGATGCAGAATTGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGGGGGGAAGCGTGAACTGATCTTACCTAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTA < 2:321936/141‑1 CCCTTCACAGATTCAGAAAGGCACCTGCAATTCTTTGCATCTGTCGTTTTACCTCTGCGGTGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTA < 2:730397/143‑1 CCCTTCACAGATGCAGAACTGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTA < 1:789535/143‑1 TTCACAGATGCAGAAATGCGCCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGTACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAAAGTTTACTCACTTAGCC < 2:747716/143‑1 GCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAG < 2:790344/132‑1 GCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAG > 1:790344/1‑132 TGCACCTGCAATGCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACTGATCTTACCCAGCAATACTG‑‑TTTTTGTC‑ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGG < 2:99711/143‑1 |||||||||||||||||||||||||||||||||| CAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/572332‑572471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGG < NC_000913/2170235‑2170180 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |