| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 572471 | 56 (0.920) | 20 (0.430) +TGATCTTACCCAGCAATAGTGGACACGCGGCTAA |
15/214 | 2.3 | 36.4% | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein |
| ? | NC_000913 | = 2170235 | 36 (0.590) | noncoding (65/1258 nt) | IS3 | repeat region | |||||
ATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACA > NC_000913/2170093‑2170377 | aTCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGGCAGAGCTGACTcac > 2:1011575/1‑143 (MQ=255) aCCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGGGAGTAAACTCTCAGCAAGAGGCGCCTCACATg > 2:937347/1‑143 (MQ=37) ccGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa > 2:503431/1‑143 (MQ=255) cGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATGTTACGCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc > 1:303888/1‑143 (MQ=255) tttttGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGacaacaaca > 1:986850/1‑143 (MQ=255) gttggtcGGTGATAAATCCTGCTGCGATAAGCATTGTCGTCCGTCCGCTGTCGACAATAACGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAg < 2:719843/137‑1 (MQ=18) tttGGCTGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCCGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGt < 2:635054/143‑1 (MQ=255) ggTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATATTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAc < 2:358750/143‑1 (MQ=255) ggTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAc < 1:260542/143‑1 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCTTACTTCCGCTGTCGAGAATAACGGTCT‑ATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTa > 2:981002/1‑143 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAACACAGTATCAACCAGt > 1:65858/1‑143 (MQ=255) aTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATCGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTACCCACCAGTaaaa > 1:923828/1‑143 (MQ=255) tCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaaaa < 1:894894/143‑1 (MQ=255) ccTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaaaaa < 1:130932/143‑1 (MQ=255) cTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGGGTAAACTCTCAGTCAGAGGTGGCTCAGGTGACAAAGACAGGAGGAACCAGGaaaaaag > 1:139906/1‑142 (MQ=21) aTAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCCGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGGCAAAAACAGTATCAACCAGTACAAAACCCCGTaaa > 1:677013/1‑143 (MQ=255) tAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAAc < 1:567894/143‑1 (MQ=255) gCATTGTCGTACTTCCGCTGTCGAGAATAACGGAAAAATATTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGc > 1:878948/1‑143 (MQ=17) ttGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCAtt < 2:272196/143‑1 (MQ=255) tggTACTGCCGCCGTCGAGAAGAACGGGCTGATCTGACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGGCAGAGGTGACTCACAGGACAAAAACAGTAACAACCAGTAAAAAACCCCGTAAACAGCATTCGc < 1:54668/141‑1 (MQ=14) tCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGc < 1:910194/143‑1 (MQ=255) gTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCt > 2:526642/1‑143 (MQ=255) tACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGCCTCACATGACACAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTg > 1:539812/1‑143 (MQ=255) cTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGaa > 2:968336/1‑143 (MQ=255) ttCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGAAAATAGCATTCGCCTGAAt > 2:269215/1‑143 (MQ=255) ttCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGCTGAAGCACATAACAAAAACAGTATCAACCAGTAAAAAACCCCAAAAACAGCATTCACCTAAAt > 2:389938/1‑143 (MQ=14) gCTGGCGAGAATAACGGTTTGTCCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCg < 2:259490/143‑1 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGt < 1:572985/143‑1 (MQ=40) gagaATACCGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTAAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATCCGCCGGAATTGCGCAGTGa > 2:418265/1‑143 (MQ=11) gaATAACGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAg > 1:273506/1‑143 (MQ=37) aaTAACGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCGATGAAGc > 1:549571/1‑143 (MQ=25) aaTAACGGTCTGATCTTACCCAGCAATAGTGGA‑ACGACATATTTTTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCCCCAGAACTTCGCAGTGAAGc > 2:499470/1‑143 (MQ=11) tAACGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGccc > 2:171825/1‑143 (MQ=34) actggTCTGTTCTTACCTAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCTTGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCt < 2:190062/140‑1 (MQ=11) aagggTCTGATCTTATCGAGCAATAGTGGACTCG‑CGGCTAAGTGAGTAAGCTCTCAGTTAGAGGTGACTCACATGACAAAAACAGTATCAACCGGGAGACATCCCCGCAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCt < 2:740036/140‑1 (MQ=11) aaCGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAGAGGTAGCAACCACAAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCt > 1:814914/1‑143 (MQ=11) aaCGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAGACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGccgt > 1:845828/1‑141 (MQ=18) ccAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACatgacaaaaacagtattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagcattgcaggtgca < 2:99711‑M2/143‑88 (MQ=255) ggCTAAGTGAGTAAACTTTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagtacacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggcgcatttctgcatctgtgaa < 2:747716‑M2/143‑107 (MQ=255) cTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgc < 2:790344‑M2/132‑98 (MQ=255) cTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgc > 1:790344‑M2/1‑35 (MQ=255) tAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcagttctgcatctgtgaaggg < 1:789535‑M2/143‑110 (MQ=255) tAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttccccaccgcagaggtaaaacgacagatgcaaagaattgcaggtgcctttctgaatctgtgaaggg < 2:730397‑M2/143‑110 (MQ=255) tAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctaggtaagatcagttcacgcttcccccccgcagaggtcaaacgctagatgcaaagaattgcaggtgcaattctgcatctgtgaagag < 2:321936‑M2/143‑110 (MQ=255) aGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaaga < 1:244632‑M2/143‑116 (MQ=255) ctctCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagttt < 1:630287‑M2/143‑122 (MQ=255) tgacgcagaggttACTCATttagccgcgtgtccactattgctgggtaagatcaggtcacgcgtcccctccgcagatgtcaaacgctagatgcaaagtattgcaggtccatttctgcatctgtgaagggagaatagagtttgga > 1:489323‑M2/6‑19 (MQ=255) tgagaggtGACGTACttagccgcgtggccactattgctgggtaagatgagttcacgcttcccctccgcagagggcaaccgcgagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgt > 2:92197‑M2/3‑15 (MQ=255) agacttgactcACgtagccgctggtcccctactgctgggtaagatcagttcacgcttcccctccgcaggggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgtat > 2:778983‑M2/6‑13 (MQ=255) ttgACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgtatgtgc > 1:164269‑M2/2‑9 (MQ=255) gACTCACgtagccgcgcgtccactagtgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacggtagatgcaaagaagtgcaggtgcatttctgcatctgtgaagggagaagagagtctggactgtgtgtgcgc > 2:801133‑M2/1‑7 (MQ=255) tCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagttaggatagtaggtgggcgta < 2:314574‑M2/143‑140 (MQ=255) tCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcaatacggcatctgtgacgggcgaagagagtttggattgtatgtgcgctta < 2:180668‑M2/143‑140 (MQ=255) tCACttagccgcgggtccagtattgctgggtaagttcagttcacgcttcacgcccgcagaagtccgacgctagatgaaaagaattgtaggtgcatttctgcatctgtgaagggagaagagtgtttggattgtatgtgcgcgta > 2:1122344‑M2/1‑4 (MQ=255) aCttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttccgcatctgtgaagggagaagagagtgtggattgtatgtgcgcgtatg < 2:18992‑M2/143‑142 (MQ=255) aCttagccgcgtgtccactattgctgggtaagatcagttcacacttcccctcggcaaaggtcaaacgatagatgcaaagcattgcaggtgcatttctgcatctgtgaagggagcggagcggtcgggtcgcatgtgcgcatcaa < 1:229002‑M2/143‑142 (MQ=255) cttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggagtgtatgtgcgcatacac < 2:954116‑M2/143‑143 (MQ=255) | ATCACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACG‑CGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTACA > NC_000913/2170093‑2170377 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |