mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 38.0% | 37.9 / 68.2 | 71 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 57 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 275149 | NA (NA) | 61 (1.010) | 48/282 | 0.2 | 2.2% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 570591 = | 2769 (45.680) | intergenic (+163/‑302) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 273955 = | NA (NA) | 38 (0.630) | 33/280 | 0.9 | 1.4% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 570594 | 2742 (45.560) | intergenic (+166/‑299) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 568678 = | 2918 (48.140) | 33 (0.570) | 23/268 | 1.8 | 1.2% | intergenic (+31/‑17) | emrE/ylcJ | multidrug/betaine/choline efflux transporter EmrE/protein YlcJ |
| ? | NC_000913 | 568704 = | 2634 (45.730) | coding (10/150 nt) | ylcJ | protein YlcJ | |||||
| * | ? | NC_000913 | 568559 = | 2718 (44.840) | 59 (1.020) | 20/270 | 2.4 | 2.2% | coding (245/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | 568576 = | 2525 (43.510) | coding (262/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE | |||||
| * | ? | NC_000913 | = 566841 | 32 (0.530) | 14 (0.300) +34 bp |
12/214 | 3.1 | 29.5% | noncoding (65/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 56 (0.920) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
| * | ? | NC_000913 | 392902 = | 28 (0.460) | 14 (0.300) +34 bp |
12/214 | 3.1 | 30.5% | noncoding (65/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 56 (0.920) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
| * | ? | NC_000913 | = 315290 | 29 (0.480) | 14 (0.300) +34 bp |
12/214 | 3.1 | 30.3% | noncoding (62/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 56 (0.920) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
| * | ? | NC_000913 | 570695 = | 3004 (49.560) | 28 (0.490) | 16/268 | 3.2 | 0.97% | intergenic (+267/‑198) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570719 = | 2867 (49.770) | intergenic (+291/‑174) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | = 572325 | 2742 (45.240) | 16 (0.280) | 12/262 | 4.1 | 0.65% | intergenic (+74/‑43) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572334 | 2314 (41.090) | intergenic (+83/‑34) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | 572316 = | 2674 (44.120) | 24 (0.430) | 11/262 | 4.4 | 0.99% | intergenic (+65/‑52) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | 572345 = | 2315 (41.110) | intergenic (+94/‑23) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH | |||||