| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2252869 | NA (NA) | 4 (0.150) | 3/250 | NT | NA | noncoding (19/28 nt) | other | REPv157b |
| ? | NC_000913 | = 2252879 | NA (NA) | noncoding (9/28 nt) | other | REPv157b | |||||
GCAGCTTAAACAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGAAAGCGTCGCCGCCGCCAGCGCCCGTAAACCAAGCTGGGCGATTTCCGGCGCACGGTGTGGCGCAA > NC_000913/2252727‑2253010 | gCAGCTTAAACAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGAT < 1:474750‑M1/143‑1 (MQ=255) gCTTAAACAACCCTACCCTGTCTGCCGATAGCGCGCTTTCATTAGTGCCAATGGTGTAACGATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAg < 2:303470/143‑1 (MQ=255) gCTTAAACAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAg < 2:112616/143‑1 (MQ=255) gCTTAAACAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAg < 2:114719/143‑1 (MQ=255) ttAAACAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCt > 1:219926/1‑143 (MQ=255) ttAAACAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAAGCCTGATAAGCt > 1:104339/1‑143 (MQ=255) caacCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCTGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTgcgc < 1:421464/143‑1 (MQ=255) cctaccctGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCatca < 1:276942‑M2/143‑5 (MQ=255) taccctGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATgcgcaagcttatcagg < 1:165802‑M1/143‑17 (MQ=255) taccctGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCatcagg > 1:213439‑M2/1‑137 (MQ=255) accctCTCTGCCGATACCGCGCTTTCCTCAGTGCCCATGGTCTACCAATGTTGCCGGATGCGTCGCTTAACGCGTCTTCTCCGGCCTACAACTCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATgcgcaagcttatcaggn < 1:56092‑M1/143‑18 (MQ=255) gCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCGGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCAGATAAGCTTGCGCATCAGGCAATGACACt > 2:326971/1‑143 (MQ=255) gATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCaa < 2:426362/143‑1 (MQ=255) aTAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATgcgcaagcttatcaggcctacatttacttg < 1:354123‑M1/143‑31 (MQ=255) cgcgCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCCAGGAAATGTAGCCCTGATAAGCTTGCGCATCAGGCAATGACACTCACGCTaa > 2:525022/1‑143 (MQ=255) cTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATgcgcaagcttatcaggcctacatttacttgctgaaatt < 2:438002‑M1/143‑39 (MQ=255) tttCATTGGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCTCATCAGGCAATGACACTCAAGCTAACCCaa > 1:12668/1‑143 (MQ=255) tttCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCCGGCAATGACACTCCAGCTAAACCaa > 2:176053/1‑143 (MQ=255) catAGTGCGAATGGTGTTACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATaaa < 2:400361/141‑1 (MQ=255) aGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGAGTCAATTTTACGCAACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGaa < 1:391338/143‑1 (MQ=255) tGCCAATGGTGTAACAATGTCGCCGGATCCGACGCTTAACGCTTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAAcc < 1:382911/143‑1 (MQ=255) ccAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAAAAAAGAACACg > 1:96055/1‑143 (MQ=255) cAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCgg < 1:415078/143‑1 (MQ=255) cAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCgg > 1:224749/1‑143 (MQ=255) cAATGGGGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCgg < 2:85832/143‑1 (MQ=255) acctggTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGc < 2:336120/138‑1 (MQ=255) ccGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGCACCCGGCAATGGTCGCACTCATCaa > 1:257739/1‑143 (MQ=255) tGCGCCGCTCAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTgg < 2:28661/143‑1 (MQ=255) ggCGACGCTTAACGCGTCTTATCCGGCCTGCAGATCAGGCAATGTCAGCAAGTAAATGTAGGCCTGATAAGCGGGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTgg < 2:32251/142‑1 (MQ=255) cGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGaa < 1:454718/143‑1 (MQ=255) cGACGCTCAACCCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGaa < 1:180391/143‑1 (MQ=255) gACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGaaa < 1:380435/143‑1 (MQ=255) gCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTAAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGCCACTCAAGCTAAACCAATAAAGAACCCGGCAATAGTCGCAATCATCAAGTTGGAAAGCg > 2:265037/1‑143 (MQ=255) gcgTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGAAAGCGTcgccgc < 2:276942/143‑1 (MQ=255) cgTTTTATTCGGCCTACATATCAGTCAATTTCAGCAAGTATCTGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGTTCTCTTTTTGTTGGAAAGCGTcgccgcc < 2:308024/143‑1 (MQ=255) gTCTTAGCCGGCCTACAAATCCGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGAAAGCGTcgccgccg < 2:309784/143‑1 (MQ=255) tCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGCCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATAAAGTGGGAAAGCCGCACCCCCCCCAgcc > 2:234301/1‑142 (MQ=38) cGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGAAAGCGTCGCCGCCGCCAGCGcc > 2:481274/1‑143 (MQ=255) gCCTGCAAATCCGGCAATGTCAGCAAGTAAATGTAGGCCTGAGAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGACCCCGGCAATGGTCGCACTCATCAAGTTGGAAAGCGTCGCCGCCGCCAGCGCCCg < 2:513545/143‑1 (MQ=255) aaTTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCatcaggcctacatttacttgctgaaattgcctgatttgtaggccggataagacgcgttaagcgtcgcatccggcaacattgttacaccattggcactaatgaaag < 2:438002‑M2/143‑106 (MQ=255) cAAGTAAATGTAGGCCTGATAAGCTTGCGCatcaggcctacatttacttgctgaaattgcctgatttgtaggccggataagacgcgttaagcgtcgcatccggcaacattgttacaccattggcactaatgaaagcgcgttat < 1:354123‑M2/143‑114 (MQ=255) aactcaaTGTAGGCCGGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAAGGGTCGCACTCATCAAGTTGGAAAGCGTCGCCGCCGCCAGCGCCCGTAAACCAAGCTGGGCGATTTCCgg < 1:529520/138‑1 (MQ=255) cggcaaTGTAGCCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTACACCAATAAAGAACCCGGCAATGGTCGCACTCAGCCAGTTGGAAAGCGTCGCCGCCGCCAGCGCCCGTAAACCAAGCTGGGCGATTTCCGgc < 2:449017/139‑1 (MQ=25) gTAGGCCTGATAAGCTGGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGAAAGCGGCGCCGCCGCCAGCGCCCGTAAACCAAGCTGGGCGATTTCCGGCGCACGgt < 2:6250/143‑1 (MQ=255) aGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGAAAGCGTCGCCGAAGCCACAGCGCGTATAGCAGGCTGGGCGATTTCCGGCGCACGgcgt > 1:507486/1‑143 (MQ=25) ggCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGAAAGCGTCGCCGCCGCCAGCGCCCGTAAACCAAGCTGGGCGATTTCCGGCGCACGGtgtg < 1:41328/143‑1 (MQ=255) ncctGATAAGCTTGCGCatcaggcctacatttacttgctgaaattgcctgagttgtaggccggagaagacgcgttaagcgacgcatccggcaacattggtagaccatgggcactgaggaaagcgcggtatcggcagagagggt < 1:56092‑M2/142‑127 (MQ=255) ccTGATgcgcaagcttatcaggcctacatttacttgctgaaattgcctgatttgtaggccggataagacgcgttaagcgtcgcatccggcaacattgttacaccattggcactaatgaaagcgcgttatcggcagacagggta > 1:213439‑M1/1‑6 (MQ=255) ccTGATAAGCTTGCGCatcaggcctacatttacttgctgaaattgcctgatttgtaggccggataagacgcgttaagcgtcgcatccggcaacattgttacaccattggcactaatgaaagcgcgttatcggcagacagggta < 1:165802‑M2/143‑128 (MQ=255) tGATgcgcaagcttatcaggcctacatttacttgctgaaattgcctgatttgtaggccggataagacgcgttaagcgtcgcatccggcaacattgttacaccattggcactaatgaaagcgcgttatcggcagacagggtagg < 1:276942‑M1/143‑140 (MQ=255) aTAAGCTTGCGCATCAGGCAACGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGAAAGCGTCGCCGCCGCCAGCGCCCGTAAACCAAGCTGGGCGATTTCCGGCGCACGGTGTGGCGCaa < 2:487052/143‑1 (MQ=255) | GCAGCTTAAACAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGAAAGCGTCGCCGCCGCCAGCGCCCGTAAACCAAGCTGGGCGATTTCCGGCGCACGGTGTGGCGCAA > NC_000913/2252727‑2253010 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |