New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2252869	NA (NA)	4 (0.150)	3/250	NT	NA	noncoding (19/28 nt)	other	REPv157b
	?	NC_000913	= 2252879	NA (NA)					noncoding (9/28 nt)	other	REPv157b

CAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGAAAGCGTCGCCGCCGCCAGCGCCCGTAAACCAAGCTGGGCGATTTCCGGCGCACGGTGTGGCGCAACCGCAGAA  >  NC_000913/2252737‑2253018                                                                                                                                               |                                                                                                                                            caacCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCTGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTgcgc                                                                                                                                             <  1:421464/143‑1 (MQ=255)     cctaccctGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCatca                                                                                                                                         <  1:276942‑M2/143‑5 (MQ=255)       taccctGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCatcagg                                                                                                                                       >  1:213439‑M2/1‑137 (MQ=255)                 gCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCGGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCAGATAAGCTTGCGCATCAGGCAATGACACt                                                                                                                             >  2:326971/1‑143 (MQ=255)                    gATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCaa                                                                                                                          <  2:426362/143‑1 (MQ=255)                         cgcgCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCCAGGAAATGTAGCCCTGATAAGCTTGCGCATCAGGCAATGACACTCACGCTaa                                                                                                                     >  2:525022/1‑143 (MQ=255)                              tttCATTGGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCTCATCAGGCAATGACACTCAAGCTAACCCaa                                                                                                                >  1:12668/1‑143 (MQ=255)                              tttCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCCGGCAATGACACTCCAGCTAAACCaa                                                                                                                >  2:176053/1‑143 (MQ=255)                                  catAGTGCGAATGGTGTTACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATaaa                                                                                                            <  2:400361/141‑1 (MQ=255)                                     aGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGAGTCAATTTTACGCAACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGaa                                                                                                         <  1:391338/143‑1 (MQ=255)                                       tGCCAATGGTGTAACAATGTCGCCGGATCCGACGCTTAACGCTTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAAcc                                                                                                       <  1:382911/143‑1 (MQ=255)                                         ccAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAAAAAAGAACACg                                                                                                     >  1:96055/1‑143 (MQ=255)                                          cAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCgg                                                                                                    >  1:224749/1‑143 (MQ=255)                                          cAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCgg                                                                                                    <  1:415078/143‑1 (MQ=255)                                          cAATGGGGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCgg                                                                                                    <  2:85832/143‑1 (MQ=255)                                                    acctggTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGc                                                                                          <  2:336120/138‑1 (MQ=255)                                                             ccGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGCACCCGGCAATGGTCGCACTCATCaa                                                                                 >  1:257739/1‑143 (MQ=255)                                                                  tGCGCCGCTCAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTgg                                                                            <  2:28661/143‑1 (MQ=255)                                                                  ggCGACGCTTAACGCGTCTTATCCGGCCTGCAGATCAGGCAATGTCAGCAAGTAAATGTAGGCCTGATAAGCGGGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTgg                                                                            <  2:32251/142‑1 (MQ=255)                                                                    cGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGaa                                                                          <  1:454718/143‑1 (MQ=255)                                                                    cGACGCTCAACCCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGaa                                                                          <  1:180391/143‑1 (MQ=255)                                                                     gACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGaaa                                                                         <  1:380435/143‑1 (MQ=255)                                                                        gCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTAAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGCCACTCAAGCTAAACCAATAAAGAACCCGGCAATAGTCGCAATCATCAAGTTGGAAAGCg                                                                      >  2:265037/1‑143 (MQ=255)                                                                               gcgTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGAAAGCGTcgccgc                                                               <  2:276942/143‑1 (MQ=255)                                                                                cgTTTTATTCGGCCTACATATCAGTCAATTTCAGCAAGTATCTGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGTTCTCTTTTTGTTGGAAAGCGTcgccgcc                                                              <  2:308024/143‑1 (MQ=255)                                                                                 gTCTTAGCCGGCCTACAAATCCGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGAAAGCGTcgccgccg                                                             <  2:309784/143‑1 (MQ=255)                                                                                       tCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGCCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATAAAGTGGGAAAGCCGCACCCCCCCCAgcc                                                       >  2:234301/1‑142 (MQ=38)                                                                                         cGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGAAAGCGTCGCCGCCGCCAGCGcc                                                     >  2:481274/1‑143 (MQ=255)                                                                                           gCCTGCAAATCCGGCAATGTCAGCAAGTAAATGTAGGCCTGAGAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGACCCCGGCAATGGTCGCACTCATCAAGTTGGAAAGCGTCGCCGCCGCCAGCGCCCg                                                   <  2:513545/143‑1 (MQ=255)                                                                                                          aaTTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCatcaggcctacatttacttgctgaaattgcctgatttgtaggccggataagacgcgttaagcgtcgcatccggcaacattgttacaccattggcactaatgaaag                                    <  2:438002‑M2/143‑106 (MQ=255)                                                                                                                  cAAGTAAATGTAGGCCTGATAAGCTTGCGCatcaggcctacatttacttgctgaaattgcctgatttgtaggccggataagacgcgttaagcgtcgcatccggcaacattgttacaccattggcactaatgaaagcgcgttat                            <  1:354123‑M2/143‑114 (MQ=255)                                                                                                                   aactcaaTGTAGGCCGGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAAGGGTCGCACTCATCAAGTTGGAAAGCGTCGCCGCCGCCAGCGCCCGTAAACCAAGCTGGGCGATTTCCgg                           <  1:529520/138‑1 (MQ=255)                                                                                                                    cggcaaTGTAGCCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTACACCAATAAAGAACCCGGCAATGGTCGCACTCAGCCAGTTGGAAAGCGTCGCCGCCGCCAGCGCCCGTAAACCAAGCTGGGCGATTTCCGgc                          <  2:449017/139‑1 (MQ=25)                                                                                                                           gTAGGCCTGATAAGCTGGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGAAAGCGGCGCCGCCGCCAGCGCCCGTAAACCAAGCTGGGCGATTTCCGGCGCACGgt                   <  2:6250/143‑1 (MQ=255)                                                                                                                             aGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGAAAGCGTCGCCGAAGCCACAGCGCGTATAGCAGGCTGGGCGATTTCCGGCGCACGgcgt                 >  1:507486/1‑143 (MQ=25)                                                                                                                              ggCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGAAAGCGTCGCCGCCGCCAGCGCCCGTAAACCAAGCTGGGCGATTTCCGGCGCACGGtgtg                <  1:41328/143‑1 (MQ=255)                                                                                                                               ncctGATAAGCTTGCGCatcaggcctacatttacttgctgaaattgcctgagttgtaggccggagaagacgcgttaagcgacgcatccggcaacattggtagaccatgggcactgaggaaagcgcggtatcggcagagagggt               <  1:56092‑M2/142‑127 (MQ=255)                                                                                                                                ccTGATAAGCTTGCGCatcaggcctacatttacttgctgaaattgcctgatttgtaggccggataagacgcgttaagcgtcgcatccggcaacattgttacaccattggcactaatgaaagcgcgttatcggcagacagggta              <  1:165802‑M2/143‑128 (MQ=255)                                                                                                                                    aTAAGCTTGCGCATCAGGCAACGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGAAAGCGTCGCCGCCGCCAGCGCCCGTAAACCAAGCTGGGCGATTTCCGGCGCACGGTGTGGCGCaa          <  2:487052/143‑1 (MQ=255)                                                                                                                                       aGCCTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGAAAGCGTCGCCGCCGCCAGCGCCCGTAAACCAAGCTGGGCGATTTCCGGCGCACGGTGTGGCGCAACCg       <  1:429488/143‑1 (MQ=255)                                                                                                                                          ttGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGAAAGCGTCGCCGCCGCCAGCGCCCGTAAACCAAGCTGGGCGATCTCCGGCGCACGGTGTGGCGCGACCGCAg    >  1:79909/1‑143 (MQ=255)                                                                                                                                            gcgcATCAGGCAATGACACTCAAGCGAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCCAGTTGGAAAGCGTCGCCGCCGCCAGCGCCCGTAAACCAAGCTGGGCGATTTCCGGCGCACGGTGTGGCGCAACCGCAGaa  <  1:326971/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                            CAACCCTACCCTGTCTGCCGATAACGCGCTTTCATTAGTGCCAATGGTGTAACAATGTTGCCGGATGCGACGCTTAACGCGTCTTATCCGGCCTACAAATCAGGCAATTTCAGCAAGTAAATGTAGGCCTGATAAGCTTGCGCATCAGGCAATGACACTCAAGCTAAACCAATAAAGAACCCGGCAATGGTCGCACTCATCAAGTTGGAAAGCGTCGCCGCCGCCAGCGCCCGTAAACCAAGCTGGGCGATTTCCGGCGCACGGTGTGGCGCAACCGCAGAA  >  NC_000913/2252737‑2253018

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.