New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 56684110 (0.360)14 (0.680)
+TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA		 11/196 NT 45.7% noncoding (65/1258 nt) IS3 repeat region
?NC_000913 = 572471 35 (1.260)coding (6/456 nt) ybcN DLP12 prophage; DNA base‑flipping protein

ACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/566799‑566841
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCG  <  NC_000913/572471‑572371
                                           ||||||||||||||||||||||||||||||||||                                                                                                     
ACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATC                                     >  1:381810/1‑143
      GGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTACCTGCAAAGAATTGCCGGTGCATTCTTGCACCTGTGtt                               >  2:215394/1‑141
       GCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAG                              >  2:188734/1‑143
         TAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCCGAGGTCAAACGCTAGATGCAAGGAATTGCAGGTGCATCTCTGAATCTGTGgacgg                            >  2:444764/1‑138
         TAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGG                            >  1:227696/1‑143
             TGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCACACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGACGGGAGAA                        >  2:121031/1‑143
             TGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCATGCGCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAA                        >  1:490115/1‑143
               AGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTGCCCTCCGCAGGGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGc                      >  1:298845/1‑142
                        tgAGTGAGAGCTGACTCACTTAGCCGCGGGTCCACCATTGCTGGGTACCCACACCTCACGCGTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGA             <  2:357036/141‑1
                             gatagtTGACTCACTTAGACGAGTGTACACGATGGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGGATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTA        <  1:474172/137‑1
                                 gtTGACTGACTTAGCCGCGTGTCCACGATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCTGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTG    <  2:370623/141‑1
                                 ggaGACTCACACAGCCGAGTGTCCGCTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCCGCAGAGGTCAAAAGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTG    <  1:39183/140‑1
                                  tTGACTCACGTAGCGGCGTGCCCAGTATTGCTGGGTAAGATCAGTTCACGCTTCCGCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGTAGGTGCATTTCTGCATCTGTGATGGGAGAAGAGAGTTTGGATTGTATGTGC   <  2:527969/142‑1
                                   TGACTCACATAGCCGCCTGTCCACTATTGCTGGGTAAGATCAGTTCACGCTTCCCCTCGGCAGAGGTCAAACGCTAGATGCAAAGAAGTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCG  <  2:255049/143‑1
                                           ||||||||||||||||||||||||||||||||||                                                                                                     
ACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/566799‑566841
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTCACGCTTCCCCTCCGCAGAGGTCAAACGCTAGATGCAAAGAATTGCAGGTGCATTTCTGCATCTGTGAAGGGAGAAGAGAGTTTGGATTGTATGTGCG  <  NC_000913/572471‑572371

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.