| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 566841 | 10 (0.360) | 14 (0.680) +TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA |
11/196 | NT | 45.7% | noncoding (65/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 35 (1.260) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
CATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAA > NC_000913/566708‑566976 | cATTAGCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTAAGACGACagag > 2:544541/1‑140 (MQ=25) aTTACCTGGGGCCGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTCATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaaa < 1:125962/143‑1 (MQ=255) cTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTa > 2:162641/1‑143 (MQ=255) cTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGGAAACTCTCAGACAGAGGTGACGCACAGGACAAAAACAgaa > 2:283950/1‑141 (MQ=255) gggcACGCATAAGAGCTTCTGTGCGCAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATc < 1:388013/143‑1 (MQ=255) gACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGGTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAc < 1:21236/143‑1 (MQ=255) gCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACCCGCGGCTAAGTGCGTAACCTCTCAGTCAGAGGTGACTCACATGCCACATACAGTATTAACCaa > 1:332962/1‑142 (MQ=21) gTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCg < 1:15247/143‑1 (MQ=255) gTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACACACATAACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAAttt > 2:190014/1‑143 (MQ=255) gcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGGGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTg > 1:176807/1‑143 (MQ=25) acacGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatc > 1:381810‑M1/1‑43 (MQ=255) ggCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctacctgcaaagaattgccggtgcattcttgcacctgtgtt > 2:215394‑M1/1‑37 (MQ=255) gCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaag > 2:188734‑M1/1‑36 (MQ=255) tAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgccgaggtcaaacgctagatgcaaggaattgcaggtgcatctctgaatctgtggacgg > 2:444764‑M1/1‑34 (MQ=255) tAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaaggg > 1:227696‑M1/1‑34 (MQ=255) tGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcacacgctagatgcaaagaattgcaggtgcatttctgcatctgtgacgggagaa > 2:121031‑M1/1‑30 (MQ=255) tGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcatgcgctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaa > 1:490115‑M1/1‑30 (MQ=255) aGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttgccctccgcaggggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagc > 1:298845‑M1/1‑28 (MQ=255) tgagtgagagCTGACTCACttagccgcgggtccaccattgctgggtacccacacctcacgcgtcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttgga < 2:357036‑M1/141‑125 (MQ=255) gatagttgactcaCttagacgagtgtacacgatggctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtggatttctgcatctgtgaagggagaagagagtttggattgta < 1:474172‑M1/137‑130 (MQ=255) gttgactgacttagccgcgtgtccacgattgctgggtaagatcagttcacgcttcccctctgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgtatgtg < 2:370623‑M1/141‑134 (MQ=255) ggagactCACacagccgagtgtccgctattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaaagctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgtatgtg < 1:39183‑M1/140‑134 (MQ=255) ttgACTCACgtagcggcgtgcccagtattgctgggtaagatcagttcacgcttccgctccgcagaggtcaaacgctagatgcaaagaattgtaggtgcatttctgcatctgtgatgggagaagagagtttggattgtatgtgc < 2:527969‑M1/142‑135 (MQ=255) tGACTCACatagccgcctgtccactattgctgggtaagatcagttcacgcttcccctcggcagaggtcaaacgctagatgcaaagaagtgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgtatgtgcg < 2:255049‑M1/143‑136 (MQ=255) | CATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAA > NC_000913/566708‑566976 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |