New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2942789 =	31 (1.110)	3 (0.110)	3/250	NT	10.3%	noncoding (94/205 nt)	gcvB	small regulatory RNA GcvB
	?	NC_000913	2942808 =	23 (0.870)					noncoding (113/205 nt)	gcvB	small regulatory RNA GcvB

GTCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAAT  >  NC_000913/2942656‑2942918                                                                                                                                      |                                                                                                                                  ttCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGa                                                                                                                          <  2:165109/142‑1 (MQ=255)  tCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGAt                                                                                                                         >  2:34308/1‑143 (MQ=255)     gTTGAGCTTCGACCAGCAGAGACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCa                                                                                                                      <  1:198860/143‑1 (MQ=255)       tGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGa                                                                                                                    <  1:460375/143‑1 (MQ=255)          gCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGAGCa                                                                                                                 >  1:40600/1‑143 (MQ=255)           cTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGCTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCAt                                                                                                                >  1:5151/1‑143 (MQ=255)               tACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTa                                                                                                            <  2:6988/143‑1 (MQ=255)               tACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTa                                                                                                            <  2:272141/143‑1 (MQ=255)                  cAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGCTGAACTTTTGGCTTACCGTTGTGATGGTGTGTTGTTCTGTTTGCAATTGGTCTGCGACTCGCACCACGGTATCa                                                                                                         >  2:195379/1‑143 (MQ=255)                    gtggttcgcgagagggaggtaaaaagaggcaccgcaattgggcggtgctacattaatcactatggacagacagggtaaatgtacaggaagtgaaaaaaggtagctttgctaccaTGGTCTGCGATTCAGACCATGGTAGCaaa                                                                                                       >  2:390112‑M1/115‑143 (MQ=255)                    gCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCaaa                                                                                                       <  1:441011/143‑1 (MQ=255)                            cTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGAGAGTCAGACAATGGTAGCACACCTACCtt                                                                                               >  2:337444/1‑143 (MQ=255)                                  tGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCa                                                                                         >  1:190705/1‑143 (MQ=255)                                   ggcggcACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCAc                                                                                        <  1:323317/143‑1 (MQ=255)                                      ggcACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGGTGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTc                                                                                     >  1:198776/1‑143 (MQ=255)                                       gcACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTcc                                                                                    >  1:1904/1‑143 (MQ=255)                                                  gCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTAc                                                                         <  2:412566/143‑1 (MQ=255)                                                   ccGAAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTAcc                                                                        <  1:241660/143‑1 (MQ=255)                                                                    aTCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGa                                                       <  1:415685/143‑1 (MQ=255)                                                                         aaTGCGTTTTCTGGGGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTTCCCTGTCTGTCCATAGTGATTAAt                                                  <  2:540354/143‑1 (MQ=255)                                                                             cGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAg                                              <  1:391651/143‑1 (MQ=255)                                                                              gtgtTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGc                                             <  2:9429/143‑1 (MQ=255)                                                                              gtgtTCTGGTGAACTTTTGCCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGc                                             <  1:157261/143‑1 (MQ=255)                                                                                 ttCTGGTGAACTTTTGGCTTACGGAAGTGATGATGTGTTGTTGTGTTTGCAATTGGTCTGCGAGTCAGACCAAGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCATGTCTGTCAATAGGCGTTAATGTAGCaac                                          >  2:514897/1‑141 (MQ=255)                                                                                       tGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCCCCGCCTaa                                    >  1:138256/1‑143 (MQ=255)                                                                                         acagggtaaatgtacaggaagtgaaaaaaggtagctttgctaccaTGGTCTGCGATTCAGACCATGGTa                                                                                                            <  1:454147‑M1/24‑1 (MQ=255)                                                                                         acagggtaaatgtacaggaagtgaaaaaaggtagctttgctaccaTGGTCTGCGATTCAGACCATGGTa                                                                                                            >  2:454147‑M1/46‑69 (MQ=255)                                                                                            ttttGGCTTACGGTTGTGATGTTGTGTTGTTCTGTTTTCAATTGGTCTGCGATTCAGACCATCGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCAGAGTGAGTAGTGTCGCACCGCCTAATTGCg                               >  1:128662/1‑143 (MQ=255)                                                                                              tttgCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGt                             <  2:488890/140‑1 (MQ=255)                                                                                                       ggTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCGTTTTTCACGTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACAGCCTAATTGCGGTGCgtgtttt                    >  2:436896/1‑143 (MQ=255)                                                                                                          tgtgATGTTGTTTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTAc                 <  2:68581/143‑1 (MQ=255)                                                                                                              aTGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTg             <  1:141512/143‑1 (MQ=255)                                                                                                                   gtgttgttgtgttTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATc        <  1:278076/143‑1 (MQ=255)                                                                                                                         ttgtgttTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCCCCTAATTGCGGGGCTTTTTTTAACTTTTCGATCGCGAAt  >  2:299266/1‑143 (MQ=255)                                                                                                                                      |                                                                                                                                  GTCCGTTGAGCTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAAT  >  NC_000913/2942656‑2942918

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.