New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2942789 =	31 (1.110)	3 (0.110)	3/250	NT	10.3%	noncoding (94/205 nt)	gcvB	small regulatory RNA GcvB
	?	NC_000913	2942808 =	23 (0.870)					noncoding (113/205 nt)	gcvB	small regulatory RNA GcvB

CTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGAC  >  NC_000913/2942666‑2942935                                                                                                                                               |                                                                                                                                cTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGCTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCAt                                                                                                                                 >  1:5151/1‑143 (MQ=255)     tACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTa                                                                                                                             <  2:272141/143‑1 (MQ=255)     tACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTa                                                                                                                             <  2:6988/143‑1 (MQ=255)        cAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGCTGAACTTTTGGCTTACCGTTGTGATGGTGTGTTGTTCTGTTTGCAATTGGTCTGCGACTCGCACCACGGTATCa                                                                                                                          >  2:195379/1‑143 (MQ=255)          gtggttcgcgagagggaggtaaaaagaggcaccgcaattgggcggtgctacattaatcactatggacagacagggtaaatgtacaggaagtgaaaaaaggtagctttgctaccaTGGTCTGCGATTCAGACCATGGTAGCaaa                                                                                                                        >  2:390112‑M1/115‑143 (MQ=255)          gCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCaaa                                                                                                                        <  1:441011/143‑1 (MQ=255)                  cTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGAGAGTCAGACAATGGTAGCACACCTACCtt                                                                                                                >  2:337444/1‑143 (MQ=255)                        tGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCa                                                                                                          >  1:190705/1‑143 (MQ=255)                         ggcggcACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCAc                                                                                                         <  1:323317/143‑1 (MQ=255)                            ggcACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGGTGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTc                                                                                                      >  1:198776/1‑143 (MQ=255)                             gcACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTcc                                                                                                     >  1:1904/1‑143 (MQ=255)                                        gCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTAc                                                                                          <  2:412566/143‑1 (MQ=255)                                         ccGAAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTAcc                                                                                         <  1:241660/143‑1 (MQ=255)                                                          aTCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGa                                                                        <  1:415685/143‑1 (MQ=255)                                                               aaTGCGTTTTCTGGGGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTTCCCTGTCTGTCCATAGTGATTAAt                                                                   <  2:540354/143‑1 (MQ=255)                                                                   cGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAg                                                               <  1:391651/143‑1 (MQ=255)                                                                    gtgtTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGc                                                              <  2:9429/143‑1 (MQ=255)                                                                    gtgtTCTGGTGAACTTTTGCCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGc                                                              <  1:157261/143‑1 (MQ=255)                                                                       ttCTGGTGAACTTTTGGCTTACGGAAGTGATGATGTGTTGTTGTGTTTGCAATTGGTCTGCGAGTCAGACCAAGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCATGTCTGTCAATAGGCGTTAATGTAGCaac                                                           >  2:514897/1‑141 (MQ=255)                                                                             tGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCCCCGCCTaa                                                     >  1:138256/1‑143 (MQ=255)                                                                               acagggtaaatgtacaggaagtgaaaaaaggtagctttgctaccaTGGTCTGCGATTCAGACCATGGTa                                                                                                                             <  1:454147‑M1/24‑1 (MQ=255)                                                                               acagggtaaatgtacaggaagtgaaaaaaggtagctttgctaccaTGGTCTGCGATTCAGACCATGGTa                                                                                                                             >  2:454147‑M1/46‑69 (MQ=255)                                                                                  ttttGGCTTACGGTTGTGATGTTGTGTTGTTCTGTTTTCAATTGGTCTGCGATTCAGACCATCGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCAGAGTGAGTAGTGTCGCACCGCCTAATTGCg                                                >  1:128662/1‑143 (MQ=255)                                                                                    tttgCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGt                                              <  2:488890/140‑1 (MQ=255)                                                                                             ggTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCGTTTTTCACGTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACAGCCTAATTGCGGTGCgtgtttt                                     >  2:436896/1‑143 (MQ=255)                                                                                                tgtgATGTTGTTTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTAc                                  <  2:68581/143‑1 (MQ=255)                                                                                                    aTGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTg                              <  1:141512/143‑1 (MQ=255)                                                                                                         gtgttgttgtgttTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATc                         <  1:278076/143‑1 (MQ=255)                                                                                                               ttgtgttTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCCCCTAATTGCGGGGCTTTTTTTAACTTTTCGATCGCGAAt                   >  2:299266/1‑143 (MQ=255)                                                                                                                  tttgctaccatggtctgaatcgcagaccaTGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCCAATTGCGGTGCCTCTTTTTACCTCCCTCTcgcgaaccac                >  2:390112‑M2/30‑139 (MQ=255)                                                                                                                       taccatggtctgaatcgcagaccaTGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCctgt                                                                                     <  1:454147‑M2/45‑1 (MQ=255)                                                                                                                       taccatggtctgaatcgcagaccaTGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCctgt                                                                                     >  2:454147‑M2/25‑69 (MQ=255)                                                                                                                               TCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTCCTTATCCCGTTCGa   <  1:80186‑M1/143‑1 (MQ=255)                                                                                                                               TCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGa   >  2:198776‑M1/1‑143 (MQ=255)                                                                                                                                CTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGAc  >  1:34308‑M1/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                CTTCTACCAGCAAATACCTATAGTGGCGGCACTTCCTGAGCCGGAACGAAAAGTTTTATCGGAATGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGAC  >  NC_000913/2942666‑2942935

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.