| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4100553 = | 31 (0.930) | 6 (0.180) | 6/264 | NT | 17.4% | intergenic (‑28/‑257) | rhaT/sodA | rhamnose/lyxose:H(+) symporter/superoxide dismutase (Mn) |
| ? | NC_000913 | = 4102459 | 26 (0.780) | coding (770/984 nt) | kdgT | 2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter | |||||
CACATGGTTTCCCATGACCATTTTTTTACTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGCAATCACGGCATTAAGTGGGTGATTTGCTTCACATCTCGGGCATTTTCCTGC > NC_000913/4100413‑4100685 | ggcaataccattgatttgactgtgattgcccagactggtttgctggggatcctgttgggtgtggcagtaattatcgtgaccggtattccgttgattatcgccgataaattgattggcggtggcgatggcactgccggaatGTc < 1:174072‑M1/3‑1 (MQ=255) acaTGGTTTCCCATGACCATTTTTTTACTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATCCTCATCATTTTTCGTCGCGTca > 1:318911/1‑143 (MQ=255) acaTGGTTTCCCATGACCATTTTTTTACTTTTTTGAACGGAGCGTAAAAACAGGCCGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTCTCCTCATCATTTTTCGTCGCGTca > 1:319746/1‑143 (MQ=255) caataccattgatttgactgtgattgcccagactggtttgctggggatcctgttgggtgtggcagtaattatcgtgaccggtattccgttgattatcgccgataaattgattggcggtggcgatggcactgccgggatGTcac < 1:643664‑M1/5‑1 (MQ=255) caataccattgatttgactgtgattgcccagactggtttgctggggatcctgttgggtgtggcagtaattatcgtgaccggtattccgttgattatcgccgataaattgattggcggtggcgatggcactgccggaatGTcac < 1:358304‑M1/5‑1 (MQ=255) aTGGTTTCCCATGACCATTTTTTTACTTTTTTGAATTGAGCGTAAAAACAGGCTGCACTGTCCGCTCCGATCAAATGCCAAAATATACCTATCGTTATCGCGGTAATCATCTTCTTTTTCTCATCATTTTTCGTCGCGTcgca > 2:150740/1‑143 (MQ=255) actgtgattgcccagactggtttgctggggatcctgttgggtgtggcagtaattatcgtgaccggtattccgttgattatcgccgataaattgattggcggtggcgatggcactgccggaatGTCCCATCTCCGACGAGATGa < 1:462036‑M1/21‑1 (MQ=255) aTTTTTTTACTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATCCTCATCATTTTTCTTCGCGTCACATCTCCGACGAGATGAg > 1:344044/1‑143 (MQ=255) tttttttACTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCACAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATCCTCATCATTTTTCGGCGCGTCACATCTCCGACGAGATGAgt < 2:626058/143‑1 (MQ=255) tgtgattgcccagactggtttgctggggatcctgttgggtgtggcagtaattatcgtgaccggtattccgttgattatcgccgataaattgattggcggtggcgatggcactgccggaatGTCACATCTCCGACGAGGTGAgt < 1:23171‑M1/23‑1 (MQ=255) ttgctggggatcctgttgggtgtggcagtaattatcgtgaccggtattccgttgattatcgccgataaattgattggcggtggcgatggcactgccggaatGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGa > 2:174072‑M1/102‑143 (MQ=255) ggAGCGTAAAAACAGGCCGCACTGGCCTCGTCGATCAAATGCCAAAATATCCCCATCGTATTCGCGTTACTCATCTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGa < 2:357804/143‑1 (MQ=255) gTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAAc < 1:175287/143‑1 (MQ=255) cAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGc > 1:284856/1‑143 (MQ=255) gCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGGCTg > 2:393123/1‑143 (MQ=255) tGCACTGGCCGCGCCGATCAAATGCCAAAATATCTCCATCGTAATCGCGTTACTCATCTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGtt < 1:584327/143‑1 (MQ=255) tGCACTGGCCGCGCCGACCAAATGCCAAAATATCCCCACCGTAAGCGCGTTACTCATCTTCTTATCCTCATCCGTTTTCGTCGCGTCACATCCCCCACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGtt < 1:452827/143‑1 (MQ=255) cTGGCCGCGCCGATCAAATGCAAAAATACCCCCATCGTAATCGCGTTACTCATCTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTgccg < 2:15916/143‑1 (MQ=255) taattatcgtgaccggtattccgttgagtatcgccgataaattgattggcggtggcgatggcactgccggaatGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGt > 2:394452‑M1/74‑143 (MQ=255) cGATCGAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCAACGAGATGAGCGTAAAAATCGTGCTGTCGATTCACCTTTCGCCTGGTGCTGCCGCTGGCgg > 2:546141/1‑142 (MQ=255) aaaTGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTAc < 1:384305/143‑1 (MQ=255) tgaccggtattccgttgattatcgccgataaattgattggcggtggcgatggcactgccggaatGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGGTGTCGAGTTACt < 2:207912‑M1/79‑1 (MQ=255) gCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGCCGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGc > 2:369838/1‑143 (MQ=255) cccgaaTATCCCCATCGTAATCGCGTTACTCATCTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGCa < 2:283456/139‑1 (MQ=255) ccccATCGTAATCGCGTTACTCATCTTCTTATCCTCATCATTTTCCGTCGCGTCCCATCTCCGACGACATGACTGTACAAATCGTCCTGTCGCTTAACCTGTCGACTGTTGCCCCCGATCTCGACTTACTGGCACACACTGCa > 2:174329/1‑143 (MQ=255) ccccATCGTAATCGCGCTACTCATCTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGCAATCACGGCa < 1:538835/143‑1 (MQ=255) ccATCGTAATCGCGTTACTCATCTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGCGCTGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTTTTGCCGCCGTTGTCGACTTACTGGCAATCCCGGCAtg > 1:593766/1‑142 (MQ=255) tCGTAATCGCGTGACTCATCTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGGAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGCAATCACGGCATTAAg < 2:501371/143‑1 (MQ=255) tAATCGCGTTACTCATCTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCTATTTACTGGCAATCACGGCATTAAGTgg < 2:218150/143‑1 (MQ=255) tCGCGTTACTCATCTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTACCCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGCAATCCCGGCATCACGTGGGtc > 2:110386/1‑142 (MQ=255) ttACTCATCTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGCAATCACGGCATTAAGTGGGTGATTTg > 1:380098/1‑143 (MQ=255) aacttgatgggcgttggcgatggcactgccggaatGTCACATCTCCGGCGAGATGAGGGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGCAATCACGGCATTAAGTGGGTGATTTg > 2:358304‑M1/36‑143 (MQ=255) tCATCTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGACTGTTGCCGCCGTTGTCGATTTACTGGCAATCACGGCATTAAGTGGGTGATTTGCTTc > 1:550155/1‑143 (MQ=255) cttATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGCAATCACGGCATTAAGTGGGTGATTTGCTTCACAtctc > 1:566331/1‑143 (MQ=255) aTCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGCTGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGCAATCACGGCATTAAGTGGGTGATTTGCTCCACACCTCgtg > 2:223717/1‑141 (MQ=255) aTCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGCAATCACGGCATTAAGTGGGTGATTTGCTTCACATCTCggg < 2:284856/143‑1 (MQ=255) ccccatcatTTCCCGCCCCGTCACGTCTCCCACCAGCTGAGTCTAAACATCGTGCTGCCGATCAACCTTTCGCCTGTTGCACCCGTTGTCGATTTACTGCCAATCACGGTGCTAAGTGGGTGATTTGCTTCACATCTCGGGCa < 2:264972/140‑1 (MQ=255) catcatTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGCAATCACGGCATTAAGTGGGTGATTTGCTTCACATCTCGGGCAttc > 2:624872/1‑142 (MQ=255) atTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGAGTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGCAATCACGGCATTAAGTGGGTGATTTGCTCCACATCTCGGGCATTTTCCt < 2:81767/143‑1 (MQ=255) tttttCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGGCGATTAACCTTTCGCCTGTTGCCGCCGTTGTGGATTTACTGGTAATCGAGACGTTAAGAGGGTGACTCGCTGAGCATCTCCGGCAATCTCCTg > 2:77671/1‑143 (MQ=255) tttctCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGCAATCACGGCATTAAGTGGGTGATTTGCTTCACATCTCGGGCATTTTCCTg < 1:181691/143‑1 (MQ=255) ttttCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGCAATCACGGCATTAAGTGGGTGATTTGCTTCACATCTCGGGCATTTTCCTGc > 1:400269/1‑143 (MQ=255) | CACATGGTTTCCCATGACCATTTTTTTACTTTTTTGAACGGAGCGTAAAAACAGGCTGCACTGGCCGCGCCGATCAAATGCCAAAATATCCCCATCGTAATCGCGTTACTCATCTTCTTATCCTCATCATTTTTCGTCGCGTCACATCTCCGACGAGATGAGTGTAAAAATCGTGCTGTCGATTAACCTTTCGCCTGTTGCCGCCGTTGTCGATTTACTGGCAATCACGGCATTAAGTGGGTGATTTGCTTCACATCTCGGGCATTTTCCTGC > NC_000913/4100413‑4100685 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |