New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4100553 =	31 (0.930)	6 (0.180)	6/264	NT	17.4%	intergenic (‑28/‑257)	rhaT/sodA	rhamnose/lyxose:H(+) symporter/superoxide dismutase (Mn)
	?	NC_000913	= 4102459	26 (0.780)					coding (770/984 nt)	kdgT	2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter

GGCAATACCATTGATTTGACTGTGATTGCCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATGGTGCCTGCGTTTAAACCGATGGCTCCGGCAGCAACTTCGCTGGTAGCGACGGCGGTCATTGTGACTTCGATTCTGGTGCCA  >  NC_000913/4102320‑4102598                                                                                                                                            |                                                                                                                                            ggCAATACCATTGATTTGACTGTGATTGCCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATgtc                                                                                                                                          <  1:174072‑M2/143‑4 (MQ=255)   cAATACCATTGATTTGACTGTGATTGCCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGGATgtcac                                                                                                                                        <  1:643664‑M2/143‑6 (MQ=255)   cAATACCATTGATTTGACTGTGATTGCCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATgtcac                                                                                                                                        <  1:358304‑M2/143‑6 (MQ=255)       aCCATTGATTTGACTGTGATTGCCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTc                                                                                                                                    >  1:112777/1‑143 (MQ=255)         cATTGATTTGACTGTGATTGCCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGCTATTCCGCTGATTATCGCCGATAGATTGATTGGCGGCGGCGATGGCCCTGCCCGAATTGCCGCTTCCa                                                                                                                                  >  2:258744/1‑143 (MQ=255)                   aCTGTGATTGCCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATgtcccatctccgacgagatga                                                                                                                        <  1:462036‑M2/143‑22 (MQ=255)                     tgtgATTGCCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATgtcacatctccgacgaggtgagt                                                                                                                      <  1:23171‑M2/143‑24 (MQ=255)                        gATTGCCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCcg                                                                                                                   >  2:379112/1‑143 (MQ=255)                         actGCCCAGACTGGTTTGGTGGGGGTCCTGTTGCGTGGGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCcgc                                                                                                                  <  2:594756/141‑1 (MQ=255)                         aTTGCCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGAGTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTGCCGTTCGGCCGGGGCcgc                                                                                                                  >  2:418230/1‑143 (MQ=255)                              ccAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAg                                                                                                             >  2:87538/1‑143 (MQ=255)                              ccAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAg                                                                                                             <  2:210695/143‑1 (MQ=255)                                        ttGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcga                                                                                                   >  2:174072‑M2/1‑101 (MQ=255)                                        ttGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCtgt                                                                                                   <  2:118674/143‑1 (MQ=255)                                               ggATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGccgctt                                                                                            >  2:444030/1‑138 (MQ=255)                                                                gCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCGCTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGCAGCGACACCTGTGCTGCTCGCAGAAATGGTGCCTGc                                                                           >  2:278596/1‑143 (MQ=255)                                                                 cAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCGGATTGCAGAAATGGTGCCTGCg                                                                          >  1:628477/1‑143 (MQ=255)                                                                    tAATTATCGTGACCGGTATTCCGTTGAGTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttcgcctgttgccgccgttgt                                                                       >  2:394452‑M2/1‑73 (MQ=255)                                                                        tATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATGGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTGCAGTTCCGCAGGGGCCGCGGTAGCGGCACCTGCGCTGATTGCAGAAACGGTGCCTGCGCTTCAAc                                                                   >  2:127597/1‑143 (MQ=255)                                                                        tATCGGGACCGGTATTCCGTGGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCCCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATGGTGCCTGCGTTTAAAc                                                                   <  1:377839/143‑1 (MQ=255)                                                                          tctgggccGGTATGCCGTTGATTATCGCCGGTAAGTGGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATGGTGCCTGCGTTTAAACCg                                                                 <  2:620796/137‑1 (MQ=255)                                                                           cGTGGCCGGTACTCCGTTGTCGTTCGCCGATAGTTTGATTGGCGGTGGCGATGGCCCTGTCGGAACTGCCGCTTCCAGTTCCGCCGTGGCCGCGGTAGCGACCCCTGTGCTTATTGCAGAAATGGTGCCTGCGTTTAAACCgc                                                                <  2:145346/143‑2 (MQ=255)                                                                            gTGACCGGTATTCCGTTGATTATCGCCCATAAATTGATTTGCGGTGGCGATGGCACTGCCGGAATTGACGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCACACATGATGCCTGCGGTACAACCGaa                                                               >  2:452288/1‑142 (MQ=255)                                                                            gTGACCGCGACTCCGTTGAGTATCGCCGATAAATTGATTGGCGGCGGCGCTGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATGGTGCCTGCGTTTAAACCGAt                                                               <  1:142493/143‑1 (MQ=255)                                                                             tGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATgtcacatctccgacgagatgagtgtaaaaatcgtgctgtcgattaacctttcgcctgttgccgccggtgtcgagttact                                                              <  2:207912‑M2/143‑80 (MQ=255)                                                                                    tATTCCGTTGATTATCGCCGATAAATTGATTGGCGGGGGCGAGGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATGGTGCCTGCGTTTAAACCGATGGCTCCgg                                                       >  1:126129/1‑143 (MQ=255)                                                                                      ttCTGTTGATTATCGCTGATAATTTTATTGGCGTTGGCGATGGCACTGCCTGAATTGCCGCTTCCAGTTTCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATGGTGCCTGCGTTTAAACCGATGGCTCCGgca                                                     <  2:608770/143‑1 (MQ=255)                                                                                               ttATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATGGTGCCTGCGTTTAAACCGATGGCTCCGGCAGCGACTTCg                                            >  1:337030/1‑143 (MQ=255)                                                                                                          aacTTGATGGGCGTTGGCGATGGCACTGCCGGAATgtcacatctccggcgagatgagggtaaaaatcgtgctgtcgattaacctttcgcctgttgccgccgttgtcgatttactggcaatcacggcattaagtgggtgatttg                                 >  2:358304‑M2/1‑35 (MQ=255)                                                                                                            attgattgGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATGGTGCCTGCGTTTAAACCGATGGCTCCGGCAGCAACTTCGCTGGTAGCGAcgg                               >  2:222479/1‑143 (MQ=255)                                                                                                            attgattgGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATGGTGCCTGCGTTTAAACCGATGGCTCCGGCAGCAACTTCGCTGGTAGCGAcgg                               >  1:558518/1‑143 (MQ=255)                                                                                                              tgattgGCGGTGGCGATGGCACTGCCCGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATGGTGCCTGCGTTTAAACCGATGGCTCCGGCAGCAACTTCGCTGGTAGCGAcggcg                             <  2:421155/143‑1 (MQ=255)                                                                                                                           cGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATGGTGCCTGCGTTTAAACCGATGGCTCCGGCAGCAACTTCGCTGGTAGCGACGGCGGTCATTGTGACtt                <  2:112777/143‑1 (MQ=255)                                                                                                                              tGGCACTGCCTGAATTGCCGCTTCCAGTGCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATGGTGCCTGCGTTTAAACCGATGGCTCCGGCAGCAACTTCGCTGGTAGCGACGGCGGTCATTGTGACTTCGa             <  2:53339/143‑1 (MQ=255)                                                                                                                                      ccGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATGGTGCCTGCGTTTAAACCGATGGCTCCGGCAGCAACTTCGCTGGTAGCGACGGCGGTCATTGTGACTTCGATTCTGGTg     <  2:545539/143‑1 (MQ=255)                                                                                                                                         gAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATGGTGCCTGCGTTTGAACCGATGGCTCCGGCAGCAACTTCGCTGGTAGCGACGGCGGTCCTTGGGCCTTCGATTCTGGTGGCa  >  1:229171/1‑143 (MQ=255)                                                                                                                                         gAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATGGTGCCTGCGTTTAAACCGATGGCTCCGGCAGCAACTTCGCTGGTAGCGACGGCGGTCATTGTGACTTCGATTCTGGTGCCa  >  1:359061/1‑143 (MQ=255)                                                                                                                                            |                                                                                                                                            GGCAATACCATTGATTTGACTGTGATTGCCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCGTTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGTAGCGACACCTGTGCTGATTGCAGAAATGGTGCCTGCGTTTAAACCGATGGCTCCGGCAGCAACTTCGCTGGTAGCGACGGCGGTCATTGTGACTTCGATTCTGGTGCCA  >  NC_000913/4102320‑4102598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.