| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 572471 | 58 (1.070) | 17 (0.410) +TGATCTTACCCAGCAATAGTGGACACGCGGCTAA |
12/214 | 2.6 | 33.0% | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein |
| ? | NC_000913 | = 2170235 | 33 (0.610) | noncoding (65/1258 nt) | IS3 | repeat region | |||||
CACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTAC > NC_000913/2170095‑2170376 | tcgcttGATCTCTTTGGCGGTCATGAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATATCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt < 2:142523/138‑1 (MQ=25) cGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGAc > 1:508646/1‑143 (MQ=255) tatTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGGAAGCTGTCAGTCAGAGGCGCCGCCCATGCCagaaa > 2:650924/1‑143 (MQ=37) atTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGCCTGACATGACCAAAAc > 1:844284/1‑143 (MQ=255) atTTTTGGCGGTCATTAATACTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAAAGGAGACTCACATCAcaacaaa > 2:840841/1‑142 (MQ=25) tttctGGTGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACa < 2:38950/143‑1 (MQ=255) cGGTCAGTAAGCCTTCGGCGATAGGCAGTGTCGTACTTCCGCTGACGACAGGTACCAGCGCATCTTAACCGACGATAGGGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCaa < 2:708606/143‑1 (MQ=9) ggtcggtAATCCTTCGGCGATAACCGGTGTCGTACTGCCTTGGTCGGGAATAACGGTCTGACCTTACCCAGCACTAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAc < 2:990820/137‑1 (MQ=17) ggTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAc > 1:881764/1‑143 (MQ=255) tAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaa < 1:220047/143‑1 (MQ=255) tAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaa < 1:89303/143‑1 (MQ=255) actCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGAAAACTCTCAATTAGAGGAGACGCCCATAACACAAAAAGTAACAACCCGTaaa > 2:969512/3‑143 (MQ=21) aTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaaa < 1:27950/143‑1 (MQ=255) cGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAcccc > 1:542121/1‑143 (MQ=255) gCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCGGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGt > 1:834571/1‑143 (MQ=255) cGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCa > 1:124311/1‑128 (MQ=255) cGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCa < 2:124311/128‑1 (MQ=255) cGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTa > 1:794027/1‑143 (MQ=255) gATAAGCATTGTCGTACTTCCGCCGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaa < 1:18162/143‑1 (MQ=255) cATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAACACCCCGTAAACAGCa > 1:737612/1‑143 (MQ=255) tCGCACTTCCGCTGTCGAGAATACCGGTCTGATCTGACCCAGCAATCGTGGACACGCGGCTAAGTGAGTAAACCCTCAGTCAGAGGTGACTCACATGACAAACACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGc < 2:36320/143‑1 (MQ=14) aCTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCACTAGTGGCCACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGATGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGa > 1:820892/1‑143 (MQ=255) ttCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAAt > 2:619069/1‑143 (MQ=255) ttCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGCAAACTCTCCGTCAGACGTGACTCACATGAAAGGGCCGAGCGCAACCAGGACAAAAACCCGTAAACAGCATTCGCCTGAAt > 1:987548/1‑143 (MQ=14) cGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTc > 1:716959/1‑143 (MQ=255) cGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGACTGAATTTc > 1:251552/1‑143 (MQ=255) gcttgcGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCg < 2:878239/138‑1 (MQ=255) gagaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGa > 1:708111/1‑143 (MQ=38) agaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTATGCTAGCAGTCAGAGGTGCCTCACATGACAAAAACAGGATCAACCAGCAACAAACCCCGTAGACAGCATTAGCATGAATTTGGCAGttga > 2:950164/1‑140 (MQ=11) aaTAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGc > 2:29231/1‑143 (MQ=35) aaTAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGc < 1:483603/143‑1 (MQ=35) aCGGTCTGATCTTAGCCAACAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGGAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTg < 2:767812/143‑1 (MQ=12) gTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAg > 1:429905/1‑143 (MQ=11) ccAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactatctctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggt < 2:169268‑M2/143‑88 (MQ=255) tGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgcaagatgcaaagaattgcaggtgcatttctgc < 1:414662‑M2/143‑98 (MQ=255) ggCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaa < 2:711833‑M2/143‑107 (MQ=255) gCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtcccctattgctgggtaagatcagttcacgcttcccctccccagacgtcaaacgctagctgcaaagaattgcaggtgcatttcggcacctgtgacg < 2:919934‑M2/143‑108 (MQ=255) gCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaag < 1:738573‑M2/143‑108 (MQ=255) gCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactagtgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcattgctgcatctgtgcag < 1:521482‑M2/143‑108 (MQ=255) cTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagg < 2:15485‑M2/143‑109 (MQ=255) tAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcacttctgccgctgtgaaggg < 2:868131‑M2/143‑110 (MQ=255) tAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcaggtcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaaggg < 2:753028‑M2/143‑110 (MQ=255) tAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagagcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatctctgcatctgggaagggggaagaga < 2:118124‑M2/143‑118 (MQ=255) tgacagagaggtaactCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttccccaccgcagaggtcaagcgataggtgcaaagaattgcaggagaatttctgtatctgtgaagggagaagagagtttgga > 2:604935‑M2/7‑19 (MQ=255) gagggttgactcaCgtagccgcgtgcccactattgctgggtaagatcagtgcacgcttccccgccgcagaggtcagacgctagatgcaaagaattgcaggtgcagttctgcgtctgtgaagggagaagagagtttggattgta > 2:429076‑M2/7‑14 (MQ=255) cTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggatagtatgtgcgaat < 2:306377‑M2/143‑139 (MQ=255) tCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgccgaggtcaaacgctagatgcacagactcgcaggcgcatctctgcatctgtgaagggagacgagagcccggaccgtatgtgcgccta < 2:274416‑M2/143‑140 (MQ=255) tCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttggattgtatgtgcgccta < 1:963357‑M2/143‑140 (MQ=255) aCttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagctgccaagaattgcaggtgcatttctgcatctgtgaagggcgaagagagtttggattgtatgtgcgcatcaa < 2:721667‑M2/143‑142 (MQ=255) aCttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagcttggattgtaggtgcgcatcaa < 2:601580‑M2/143‑142 (MQ=255) | CACCGTGATATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTAC > NC_000913/2170095‑2170376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |